Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2016 ATGCCAGCCATTACTCGAGCAAATCACTGTAAGATCGAGAGTGGAACGAATTTTAACGATGTTACGGTTGCAAGGATGACTGATGGAGGTTCTGTAATGGAAACCACTCCTCCGAAGCGGAAACTGAGATCCAGTGACGTGCAGAGGCAACAAAGCCCTAACTCTGCGCCGGTGAGTTGGAAATCGCCTCGTCGGCGCCTTAATTCGAGTCCAAAATGCCCTCCACAGAGCGATGGGAAAACGTTTAACGATGGCTTTTCTAACTTACATAGTTCCCCGATAAGATGCTTGTTGAAGGACCTTATTGTCAAACCAGATTGGAATCCTAAGGATACTGAACATATAAAAACAGCAAAGGAAGCATTGCATGTATCGACAGCTCCAACTACAATCATGTGCCGTGAAGATGAACAAAGTAAAATCTTCAATTTCTGCAAGGCTTGTGTGGAGCAAGAAAAAGCTGGTAGTTTGTATGTTTGCGGGTGTCCAGGAACTGGCAAATCCTTGTCCATGGAAAAAGTGAAAGAGCAGTTGGCTGCTTGGGTGAAAGAGTCAGGTCTTCAGCTTCCAGACATCTTGTCCATAAACTGCACTTCCTTAGCTAACACATCCGATATTTTCATTAAGATGATGGGTGAAGCCCAACCACAAAAGAAAAGGAATGGCTCTTTAACACCCTTGCAACATCTTCAACGCTTGTACTCCCAAAAGGCAGAGTCATCTTGCATGAAGATGATGTTGATAATAGCTGATGAATTGGATTATTTAATTACAAAGGATAAAGCAGTGCTACATGATCTGTTCATGCTCACAACTTTCCCATTTTCAAGATGTATTTTGATAGGAATTGCAAATGCTATTGACTTAGCAGATCGCTTTCTTCCAAGACTTCAGGCTTTGAATTGCAAACCTCAGGTCGTAACTTATAGGGCATATTCCAAGGAACAGATCCTCAAGATTCTTCAACAAAGGTTAATTGTGCTTCCTTTCATTGTCTTTCAGTCGCAAGCACTGGAGCTTTGTGCTAGAAAAGTTGCAGCTGTCTCTGGAGATATGAGAAAAGCTCTCTGTGTTTGCAGGAATGCCATTGAATTGTTGGAGGTGGAACTCAAAGCATCCTCTAAGGAGCTGAACCATAATGACGCATGTGATGCTTCAGCACCACCTGAGCTTGTCAAAAGACGAGAGTCTCAGATTGTGAGGTTGGACCATATGGCTGTCGCCTTATCCAAGACTTTTAAATCACCAGCAGTAGAAACCATACAATCTCTTCCTCAGCATCAACAGATAATTTTATGCTCTGTTGTGAAACTTGTTCGTGGAGGAAAGAAGGATACAACTATAGGAGAGCTAAACAAATCATACGTAGAGATATGTAAATCAACACTAATCCCACCGGTGGGGAGTTTGGAACTTACAAATATGTTCACAGTGCTAAACGACCAGGGGCTTCTCAAACTTGGGCAATCTCGAGATGATAAGATGAGGCGAGTGTTGTTGAAAGTTGATGAAGCTGATGTCATGTTCGCATTACAGGGAATACGCTTCTTTCGAAATTGCCTACAGTAA 1569 42.57 MPAITRANHCKIESGTNFNDVTVARMTDGGSVMETTPPKRKLRSSDVQRQQSPNSAPVSWKSPRRRLNSSPKCPPQSDGKTFNDGFSNLHSSPIRCLLKDLIVKPDWNPKDTEHIKTAKEALHVSTAPTTIMCREDEQSKIFNFCKACVEQEKAGSLYVCGCPGTGKSLSMEKVKEQLAAWVKESGLQLPDILSINCTSLANTSDIFIKMMGEAQPQKKRNGSLTPLQHLQRLYSQKAESSCMKMMLIIADELDYLITKDKAVLHDLFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPQVVTYRAYSKEQILKILQQRLIVLPFIVFQSQALELCARKVAAVSGDMRKALCVCRNAIELLEVELKASSKELNHNDACDASAPPELVKRRESQIVRLDHMAVALSKTFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGELNKSYVEICKSTLIPPVGSLELTNMFTVLNDQGLLKLGQSRDDKMRRVLLKVDEADVMFALQGIRFFRNCLQ 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33586016 33589975 - ClG42_02g0201600.10 Clacu02g2016 244084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2016 522 Gene3D - 305 399 - -
Clacu02g2016 522 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 369 IPR027417 -
Clacu02g2016 522 CDD AAA 149 297 - -
Clacu02g2016 522 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 38 517 IPR050311 GO:0003688(PANTHER)|GO:0005634(PANTHER)|GO:0033314(PANTHER)
Clacu02g2016 522 MobiDBLite consensus disorder prediction 28 84 - -
Clacu02g2016 522 Pfam CDC6, C terminal winged helix domain 419 510 IPR015163 -
Clacu02g2016 522 Pfam AAA domain 153 273 IPR049945 GO:0016887(InterPro)
Clacu02g2016 522 SMART AAA_5 153 303 IPR003593 GO:0016887(InterPro)
Clacu02g2016 522 Pfam Cdc6/ORC-like, ATPase lid domain 312 369 IPR054425 -
Clacu02g2016 522 MobiDBLite consensus disorder prediction 47 84 - -
Clacu02g2016 522 CDD Cdc6_C 425 507 IPR015163 -
Clacu02g2016 522 FunFam Cell division control protein 112 300 - -
Clacu02g2016 522 Gene3D - 111 304 IPR027417 -
Clacu02g2016 522 Gene3D - 417 511 IPR036388 -
Clacu02g2016 522 SMART Cdc6_C_2 432 511 IPR015163 -
Clacu02g2016 522 PIRSF Cdc6 11 522 IPR016314 GO:0006270(InterPro)|GO:0051301(InterPro)
Clacu02g2016 522 SUPERFAMILY Winged helix DNA-binding domain 418 520 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2016 Clacu-Chr2:33586016 Clacu08g0027 Clacu-Chr8:570576 2.90E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2016 K02213 - csv:101205741 877.085