Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2019 ATGGCGCCAATTCCCAGATCTCTCTCCCACAAATTCTTCTTCCTTTTACTCCTCATTCTCCACGTCGGCTGCTTCCTTCTTACCACCGCCGACCACCGTCGCCGCCGCCACCACCGTCCTACTCCCTCCTGTTTGAAGCCACACAAACTCAAATCCCTAGCTTCCTCTTTTTCATTTCTCAAACGAATCTTCTCTTCCAAGACTTGCAAAATGGCAATCGAAACCGCTCGCTCGCCTTCCACTCCCGCTAGGTCATCGCAGCACTCCATCGTCACGCTCATCCAACAGGAGATTCCTCCTCCGCCGATTCCGGAGACTCATCCTCCAACCGGAACGCCGCAGGATTCAGATATCACTACGGCAGAGCCGAATCAATCTTTTCCTCTTCGAAACGATATCTTCCCCTGTACTGCTTGTGGCGAGATTTTTCCCAAAGCGCAACTCCTCGAACAGCATCAATCGATTAAACACGCTGTGTCGGAGCTTGCTGATTCGGATTCTGGAAAGAATATTGTTCGGATTATTTTCGAAACTGGATGGACGAGTAGAGAAAAAAGCCCTAAAATCCTTCGAATCTTGAAAATCCACAATAGTCAGAAGATTCTTTCCAGATTTGAAGAGTATAGAGAGACGGTGAAGGCGAAAGCGGCTATACACGGCGGCGTAAAGCGGCGGGATGAGCGGTGCATTGCCGACGGGAACGAGCTTCTGAGGTTTCATTGTTCGACGTTTTTATGCGATTTGGGGCAAAATGGTAATTCCAGTCTTTGCGGGCAGCAATTTTGTAGTATTTGTGGGATAATTAAATCGGGATTCTCACACAAGTTGGATGGAATTTCGACACTATCGAGTAGCTGGAGGGCACACGTGGCGATCCCTGAGGACATCGAAGAGGAGTTCAAGTTTCTGAATGCGAAGCGGGCGATTTTGGTTTGTCGGGTTGTGGCGGGTCGGGTCGGCTCAGACGCCGATGAGCCGGAAAAAGACGGCGGAGGGTTTGACTCCGTCGTTGGGAGGAGTGGGAGTGGGGCCCAGACCACGTTGGATGAAGAAGAGCTGTTGGTTTTCAATCCGAGGGCTGTGCTCCCCTGCTTCGCGATTGTATACGAAATCTAA 1116 50.54 MAPIPRSLSHKFFFLLLLILHVGCFLLTTADHRRRRHHRPTPSCLKPHKLKSLASSFSFLKRIFSSKTCKMAIETARSPSTPARSSQHSIVTLIQQEIPPPPIPETHPPTGTPQDSDITTAEPNQSFPLRNDIFPCTACGEIFPKAQLLEQHQSIKHAVSELADSDSGKNIVRIIFETGWTSREKSPKILRILKIHNSQKILSRFEEYRETVKAKAAIHGGVKRRDERCIADGNELLRFHCSTFLCDLGQNGNSSLCGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPEDIEEEFKFLNAKRAILVCRVVAGRVGSDADEPEKDGGGFDSVVGRSGSGAQTTLDEEELLVFNPRAVLPCFAIVYEI 371
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 33609895 33611010 - ClG42_02g0201900.10 Clacu02g2019 244087
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2019 371 MobiDBLite consensus disorder prediction 110 124 - -
Clacu02g2019 371 SUPERFAMILY ADP-ribosylation 160 370 - -
Clacu02g2019 371 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Clacu02g2019 371 Gene3D - 158 370 - -
Clacu02g2019 371 MobiDBLite consensus disorder prediction 98 124 - -
Clacu02g2019 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
Clacu02g2019 371 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 58 369 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0395 Clacu-Chr1:4016649 Clacu02g2019 Clacu-Chr2:33609895 1.70E-28 dispersed
Clacu02g2019 Clacu-Chr2:33609895 Clacu03g0934 Clacu-Chr3:12157026 9.50E-53 dispersed
Clacu02g2019 Clacu-Chr2:33609895 Clacu10g0612 Clacu-Chr10:8293674 1.30E-46 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47318 None None None None Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2019 - - - 0.0