Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2060 ATGCCTTATCGTCATTCTCAATCAGTCTGTTTCCAGGAAAGAACTGGAAATCATAATTTCAACTTTATAAACCTAATAACTCACCGCCTGATTCACCCCCTTCTCCATCGCTTGCTTTTCCCCTGTTTCTACCTCAGCTTCATTCTTGGATTCTGTTTCTATTTGGAGGCTTACATAACTATGGATCACCCAAATCTTAACGATTTCCCAGTTCGTGGAATTGATTATCAAACCCCTTTAACCCAATTTCACGATCAAACTTCTTTACCCACTTCATATCTATACCCAGAATTCGAAAACAGTTTTGTATTCAACAACCCATCTCCAGATCTTGTTCCTTTCGTCGACCCCAACGGTTCTTCAGCGGCGGAGTTGAAATTAAGCGAAGGTGTGGGTTCTTCAGGGCGAAGCCCTGGTGGCGATTCTTCCTCAGATGAGAGTGATTTCAGGGAAAGTGTTCTCAAGTACATAAGCCAAATGCTTATGGAAGAGAATTTGGAAGAGAAGCCTTGTATGTTTTATGATCCCTTGGGCCTTGAAGTTACCGAGAAATCATTCTATGATGCTCTTGTTAAGAATTACCCTCCTTCTCCTAACCAACCTCCCCTCTTGGATTGTGACAGTGATCTTGCTAGTACTACTCTTAGTGTTCCCAATACCAATTCACCTGACTCCCAATGGGTTGTTGATCCTGGAGAACATAAATCCTCTGTACTTCCAAACCCTGTTCTTAGTAGTCATGAGCTTGTCAATGAGTTGTTGGCTCATAATATCTTTAGTGATAGCACATCTATATTGCAATATCAAAAGGGGTTGGAGGAGGCAAGGAAGTTTCTTCCAGTGGGTACCCAGTTGAATATTGATCTTGGCAGTAGCATGGTACCAGGAGTAGTTTCTAAGACGGAGAATTCGCCGAATGGATCGAAGCGAAGGAAGAGTCGTGAACGTGAAGATGTGGACTTGGATTCAGAAGAAGGGAGGAGAAACAAGCATTCAACCATTTCTGTGGATGAGGAAGAATTATCCGAGATGTTTGATAAGGTTTTACTTCATGATTGTGGAAATGAGACTACTGCAAATGGTGGGCGTGAAAATTTGCAGTATAACGGTCAACTTCATGGATCGATTACTTCAAAAGCTCGGGAAAAGAAACAGGAGAAGAGAAAAGACTCTGTGGATTTGAGAAATCTTCTGATATTATGCGCACAAGCTGTGTCTTCTGATGATCGTCGGATTGCGTATGAACTGCTTAAGCAGATTAGGCAGCATTCTACAATCATTGGGGATGGTTTTCAAAGAATGGCTCATTTCTTTGCTAATGCTCTTGAGGCTCGTATGGTTGGGACTGGCACAGGAAGTAGAATCTACTATGAATCATTAGCTCAAAGCAAAATTTCAGCTGCTGATATGTTGAAAGCTTACCAAGCTCACTTATCATCCTGCCCTTTTAAGAAGCTCTCACTCTTTTTCATGATTAAAATGATTTTGAAGGTTGCTGAGAATGCTAAAAGTCTTCATGTTATTGATTTTGGCATTTGTTATGGTTTCTTATGGCCAATGTTAATTCAGTTTCTTGCACAACTACCTGATGGTCCTCCCAATCTACGCATTACCGGTATAGATCATCCTCTACCAGGATTTCGTCCAGCAGAAAAGATCGTCGAGTCAGGCCGTCGTTTGGAAAAATACTGTGAGCGGTTTAATGTTCCTTTTCAATATCAAGCCATACCATCAAATAACTGGGAAACTATCCGAGTTGAGGACTTAAAGCTCGATAGCAATGATGTGCTTGTTGTGAACTGTTTCTACAGGTTTAACAACCTACTTGACGAAACTGTTGAAGAAAGTAGTCCACGGGACGCTGTTCTTCGTTTAATAAGAAAGATGAATCCAAACATCTTTGTACATTCTGTGGTTAATGGATCCTACCATGCACCATTCTTCATAACACGATTCAGGGAAGCACTCTTCCATTTCTCTGCATTATATGATGCTCTAGACGTTAATTTACCTCGTGACAGCGATGAGAGGATGATGCTAGAGAGAGAGTTTCTCGGTCGCCAAATTATGAACGTCGTAGCATGTGAGGGTGTCCAAAGGGTTGAGAGGCCTGAAACCTATAAGCAATGGCAGGTTAGATGTATGAGGGCAGGTTTCAAGCAACTTCCTTTAGACAAAGAGATCATGAACAAGTTTAGGAGCAAACTAACGTCCTATTACCACAAAGATTTTGTACTAGATGAAGATGAGGGTTGGATGCTTCAAGGATGGAAAGGCCGGATCGTCTATGCTTCTTGTTGCTGGGTACCAGCATAG 2316 41.67 MPYRHSQSVCFQERTGNHNFNFINLITHRLIHPLLHRLLFPCFYLSFILGFCFYLEAYITMDHPNLNDFPVRGIDYQTPLTQFHDQTSLPTSYLYPEFENSFVFNNPSPDLVPFVDPNGSSAAELKLSEGVGSSGRSPGGDSSSDESDFRESVLKYISQMLMEENLEEKPCMFYDPLGLEVTEKSFYDALVKNYPPSPNQPPLLDCDSDLASTTLSVPNTNSPDSQWVVDPGEHKSSVLPNPVLSSHELVNELLAHNIFSDSTSILQYQKGLEEARKFLPVGTQLNIDLGSSMVPGVVSKTENSPNGSKRRKSREREDVDLDSEEGRRNKHSTISVDEEELSEMFDKVLLHDCGNETTANGGRENLQYNGQLHGSITSKAREKKQEKRKDSVDLRNLLILCAQAVSSDDRRIAYELLKQIRQHSTIIGDGFQRMAHFFANALEARMVGTGTGSRIYYESLAQSKISAADMLKAYQAHLSSCPFKKLSLFFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPNLRITGIDHPLPGFRPAEKIVESGRRLEKYCERFNVPFQYQAIPSNNWETIRVEDLKLDSNDVLVVNCFYRFNNLLDETVEESSPRDAVLRLIRKMNPNIFVHSVVNGSYHAPFFITRFREALFHFSALYDALDVNLPRDSDERMMLEREFLGRQIMNVVACEGVQRVERPETYKQWQVRCMRAGFKQLPLDKEIMNKFRSKLTSYYHKDFVLDEDEGWMLQGWKGRIVYASCCWVPA 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33896320 33898635 - ClG42_02g0206000.10 Clacu02g2060 244128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2060 771 MobiDBLite consensus disorder prediction 128 148 - -
Clacu02g2060 771 MobiDBLite consensus disorder prediction 305 333 - -
Clacu02g2060 771 MobiDBLite consensus disorder prediction 294 333 - -
Clacu02g2060 771 ProSiteProfiles GRAS family profile. 385 769 IPR005202 -
Clacu02g2060 771 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 378 768 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Clacu02g2060 771 Pfam GRAS domain family 394 768 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2060 Clacu-Chr2:33896320 Clacu09g0971 Clacu-Chr9:9155066 5.90E-57 dispersed
Clacu10g2088 Clacu-Chr10:34216627 Clacu02g2060 Clacu-Chr2:33896320 4.80E-160 wgd
Clacu02g2060 Clacu-Chr2:33896320 Clacu03g0137 Clacu-Chr3:1501243 4.30E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47321 PF03514 GRAS 1.00E-104 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2060 K27753 - csv:101203568 1174.07