Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g2063 | ATGGCCACTACCATTTCTCTCTGCATTGCTTCTCTTCTCTCATTTTCCCTCCTTGTCCAAGCCAGAATTCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGCGCCCACGCCACTTTCTACGGTGGCGCCGACGCTTCCGGCACCATGGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGTTATGGCGTGAACACGGCGGCCCTGAGTACCGCATTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGCGCTAATGACCCTATATGGTGCCATTCTGGTAGTCCCTCCATCTTGGTTACTGCTACTAATTTCTGCCCGCCCAACTATGCTCTTCCTAACGATAATGGAGGCTGGTGTAACCCTCCCCGGACTCACTTCGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGTGTACCATGCCGGAAGCAAGGAGGAATCAGGTTCACGATCAACGGGTTCCGTTACTTCAATTTGGTTCTAATCACCAACGTCGCAGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGAACAAGAACCGGGTGGATGAGCTTAACAAGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTCTTAGTGGGCCAGGCTCTTTCTTTTAGAGTTACCGGCAGTGACCGACGAACCTCAACGTCATGGAACATAGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTTTAA | 777 | 52.77 | MATTISLCIASLLSFSLLVQARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPIWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV | 258 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33926913 | 33928636 | + | ClG42_02g0206300.10 | Clacu02g2063 | 244131 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g2063 | 258 | Gene3D | - | 164 | 256 | IPR036749 | - | |
Clacu02g2063 | 258 | SMART | dpbb_1 | 67 | 154 | IPR007112 | - | |
Clacu02g2063 | 258 | CDD | DPBB_EXPA_N | 31 | 159 | - | - | |
Clacu02g2063 | 258 | FunFam | Expansin | 21 | 160 | - | - | |
Clacu02g2063 | 258 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 174 | 253 | IPR007117 | - | |
Clacu02g2063 | 258 | Pfam | Lytic transglycolase | 67 | 154 | IPR009009 | - | |
Clacu02g2063 | 258 | Pfam | Expansin C-terminal domain | 165 | 242 | IPR007117 | - | |
Clacu02g2063 | 258 | PRINTS | Expansin signature | 163 | 175 | IPR002963 | GO:0009664(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin signature | 239 | 255 | IPR002963 | GO:0009664(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin signature | 175 | 196 | IPR002963 | GO:0009664(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin signature | 62 | 76 | IPR002963 | GO:0009664(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin signature | 89 | 100 | IPR002963 | GO:0009664(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin signature | 122 | 139 | IPR002963 | GO:0009664(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin signature | 103 | 113 | IPR002963 | GO:0009664(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin signature | 210 | 231 | IPR002963 | GO:0009664(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin signature | 139 | 152 | IPR002963 | GO:0009664(InterPro) | |
Clacu02g2063 | 258 | SUPERFAMILY | PHL pollen allergen | 161 | 253 | IPR036749 | - | |
Clacu02g2063 | 258 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 50 | 164 | IPR007112 | - | |
Clacu02g2063 | 258 | PRINTS | Expansin/Lol pI family signature | 239 | 253 | IPR007118 | GO:0005576(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin/Lol pI family signature | 201 | 215 | IPR007118 | GO:0005576(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin/Lol pI family signature | 49 | 67 | IPR007118 | GO:0005576(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin/Lol pI family signature | 31 | 46 | IPR007118 | GO:0005576(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin/Lol pI family signature | 71 | 89 | IPR007118 | GO:0005576(InterPro) | |
Clacu02g2063 | 258 | PRINTS | Expansin/Lol pI family signature | 147 | 163 | IPR007118 | GO:0005576(InterPro) | |
Clacu02g2063 | 258 | FunFam | Expansin | 164 | 256 | - | - | |
Clacu02g2063 | 258 | PANTHER | EXPANSIN-A15 | 10 | 256 | IPR002963 | GO:0009664(InterPro) | |
Clacu02g2063 | 258 | SUPERFAMILY | Barwin-like endoglucanases | 31 | 182 | IPR036908 | - | |
Clacu02g2063 | 258 | Gene3D | - | 20 | 160 | IPR036908 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0855 | Clacu-Chr1:9694199 | Clacu02g2063 | Clacu-Chr2:33926913 | 1.60E-73 | dispersed | |
Clacu02g2063 | Clacu-Chr2:33926913 | Clacu07g0524 | Clacu-Chr7:6700707 | 4.50E-102 | dispersed | |
Clacu02g0329 | Clacu-Chr2:3013966 | Clacu02g2063 | Clacu-Chr2:33926913 | 6.70E-74 | transposed | |
Clacu02g2063 | Clacu-Chr2:33926913 | Clacu03g0145 | Clacu-Chr3:1596699 | 2.40E-95 | wgd | |
Clacu02g2063 | Clacu-Chr2:33926913 | Clacu04g0861 | Clacu-Chr4:22946884 | 1.30E-136 | wgd | |
Clacu02g2063 | Clacu-Chr2:33926913 | Clacu07g0324 | Clacu-Chr7:3670316 | 2.40E-111 | wgd | |
Clacu02g2063 | Clacu-Chr2:33926913 | Clacu09g2002 | Clacu-Chr9:34875415 | 3.70E-11 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g2063 | - | - | - | 0.0 |