Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2063 ATGGCCACTACCATTTCTCTCTGCATTGCTTCTCTTCTCTCATTTTCCCTCCTTGTCCAAGCCAGAATTCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGCGCCCACGCCACTTTCTACGGTGGCGCCGACGCTTCCGGCACCATGGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGTTATGGCGTGAACACGGCGGCCCTGAGTACCGCATTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGCGCTAATGACCCTATATGGTGCCATTCTGGTAGTCCCTCCATCTTGGTTACTGCTACTAATTTCTGCCCGCCCAACTATGCTCTTCCTAACGATAATGGAGGCTGGTGTAACCCTCCCCGGACTCACTTCGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGTGTACCATGCCGGAAGCAAGGAGGAATCAGGTTCACGATCAACGGGTTCCGTTACTTCAATTTGGTTCTAATCACCAACGTCGCAGGTGCAGGGGATATCGTGAGGGTTAGCGTCAAAGGAACAAGAACCGGGTGGATGAGCTTAACAAGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTCTTAGTGGGCCAGGCTCTTTCTTTTAGAGTTACCGGCAGTGACCGACGAACCTCAACGTCATGGAACATAGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTTTAA 777 52.77 MATTISLCIASLLSFSLLVQARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPIWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 33926913 33928636 + ClG42_02g0206300.10 Clacu02g2063 244131
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2063 258 Gene3D - 164 256 IPR036749 -
Clacu02g2063 258 SMART dpbb_1 67 154 IPR007112 -
Clacu02g2063 258 CDD DPBB_EXPA_N 31 159 - -
Clacu02g2063 258 FunFam Expansin 21 160 - -
Clacu02g2063 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Clacu02g2063 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Clacu02g2063 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Clacu02g2063 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Clacu02g2063 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Clacu02g2063 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Clacu02g2063 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Clacu02g2063 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Clacu02g2063 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Clacu02g2063 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Clacu02g2063 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Clacu02g2063 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Clacu02g2063 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Clacu02g2063 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Clacu02g2063 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Clacu02g2063 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Clacu02g2063 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Clacu02g2063 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Clacu02g2063 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Clacu02g2063 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Clacu02g2063 258 FunFam Expansin 164 256 - -
Clacu02g2063 258 PANTHER EXPANSIN-A15 10 256 IPR002963 GO:0009664(InterPro)
Clacu02g2063 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Clacu02g2063 258 Gene3D - 20 160 IPR036908 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0855 Clacu-Chr1:9694199 Clacu02g2063 Clacu-Chr2:33926913 1.60E-73 dispersed
Clacu02g2063 Clacu-Chr2:33926913 Clacu07g0524 Clacu-Chr7:6700707 4.50E-102 dispersed
Clacu02g0329 Clacu-Chr2:3013966 Clacu02g2063 Clacu-Chr2:33926913 6.70E-74 transposed
Clacu02g2063 Clacu-Chr2:33926913 Clacu03g0145 Clacu-Chr3:1596699 2.40E-95 wgd
Clacu02g2063 Clacu-Chr2:33926913 Clacu04g0861 Clacu-Chr4:22946884 1.30E-136 wgd
Clacu02g2063 Clacu-Chr2:33926913 Clacu07g0324 Clacu-Chr7:3670316 2.40E-111 wgd
Clacu02g2063 Clacu-Chr2:33926913 Clacu09g2002 Clacu-Chr9:34875415 3.70E-11 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2063 - - - 0.0