Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2074 ATGGGTAACGGGATTGGGAAGCTCGGCGTTTGCTTCACAGGAATCAACGACGGTAGGCGGCGGCCGGATATTTCCGTTCTGTTAACAAATCCACTAGATGAAGGTCTGGGGCACTCGTTTTGCTATGTCCGGCCGGATCCCTTAAGACTTTCGTCATCAAAAGTTCATTCCGAAGAAACCACCACTTTCCGATCAATCTCCGGCGCCTCTGTAAGTGCAAATACATCAACGCCTCTTTCTACTGCTCTTGTTGATCTGTATTCATACAATAGCATTGATCGAGCGGCGGCGTTTGAGAGTTCAACTTCTTTCGCTTCAATCCCTTTGCAACCGATCCCTAGAAACATGATAAATTCTGGTCCGATTTCGGGGAATTTCAATGGAATCCCCTGTTCTGGGCCTTTGGAAAGAGGGTTTTTATCGGGTCCAATCGAGCGAGGGTTTATGTCGGGTCCACTGGATCGGGGGATTTTTTCGGGTCCTCTTGAAAATTCTACATCCACTGAATTTCAGAGGAGTTTTTCTCATGGTGGTGGGTTTAATTCCAGATCTAGATCAAGAAAAAGCCGGTTAATTCGAATTCTGAGAACTGCAATTTCCAAGTCGATTCATCGAGGGCAAAATTCCATTGTGGCTCCGATTAAACCGGTTAAAGAACCCGATTGGATCGTCTTGCCCGAGAAGCATAACGAGAATTTGACTGTGAGTAGTTTGAATTTCAGTAGTGAAGGGAGTTTGGAGGATGATGATTCAATGGAAAGCCAAAATCTGCAGTGGGCTCAAGGAAAAGCAGGGGAAGATCGAGTTCATGTTGTGGTTTCTGAAGAACATGGATGGGTTTTCGTTGGGATTTATGATGGATTTAACGGTCCTGATGCTCCTGATTATCTCTTGTCCAATTTATATTCCTCTGTTCATAAAGAACTTAAAGGTTTGTTATGGGACGAAAAGCTCGATTCCGCGGGTGTTGCTGCTCCGGCAACTTCCCCTGTTCGTTCTGAGAATCCATGTTTAGAAACAAGAGATTTGGAGAGGAATCGAGTGAGTGATGCTTGTTCTCAATGTGTAGAACAAGAGAATCATCCTTGTGTTAGTGGAGAAGGGAAATCTGGATTGAATTCTAGGAAAAGAAAAGGTAAGAATTTAAGAGGAAAGTTTAGAGGAGCTGCTGAGAAGTGGGAGGATAATCAACGGCGGTGGAAGTGTGAATGGGACCGAGAAAGATTAGAACTTGATCGGAGGTTAAAGGAGCAGTTGAATCGATCGGGATTGAACGGTTCGAGGTCGATTAATCATTCAGATGTTCTCAAAGCCCTATCCCAAGCATTGAAGAAAACAGAGGAGGCCTATTTGGATATTGCAGACAAGATGCTTGATGAAAATCCTGAACTGGCTTTGATGGGTTCTTGTGTGCTTGTGATGCTTATGAAAGGAGATGATGTTTATGTGATGAATGTTGGTGACAGCCGAGCTGTTTTAGCGCAGAAGGCGGAGCCTGATTATTGGCTCGGGAAGATTCGACAAGACTTGGAGAGGATTAATGAAGAGCCAGTTCATGACATTGAAGCATTAGATTGTGATAGAGCATTCACTTCTACTAACCTTACTGCTTTTCAGCTTTCTATGGATCATAGTACTAGTGTTGATGAGGAAGTTCAGAGAATAAGAAATGAACACCCTGATGATGCTAATGCCGTGATGAACGACCGTGTTAAAGGCTCGTTGAAAGTTACTCGGGCGTTCGGTGCTGGTTTCCTTAAACAGCCTAAATGGAACAATGCATTGTTAGAGATGTTCAGAATCGACTATGTCGGGAGATCGCCATACATCAATTGTTTACCATCTCTCCACCACCATAGATTGGGACCAAAAGACAGGTTTTTGATACTATCATCTGATGGACTCTACCAATACTTCACAAATGAAGAAGCTGTTTCTGAAGTCGAACTTTTCATCGCATTGCAACCTGAAGGAGACCCGGCTCAACATCTGGTTGAATTACTTCTGTTTCGGGCTGCAAAGAGAGCTGGTATGGATTTCCATGAGTTACTCGAAATACCGCAGGGCGACCGGAGGAAGTATCATGACGACGTATCAATCATTGTAATTTCATTAGAAGGAAGGATATGGAGATCTTGTGTATAA 2145 43.78 MGNGIGKLGVCFTGINDGRRRPDISVLLTNPLDEGLGHSFCYVRPDPLRLSSSKVHSEETTTFRSISGASVSANTSTPLSTALVDLYSYNSIDRAAAFESSTSFASIPLQPIPRNMINSGPISGNFNGIPCSGPLERGFLSGPIERGFMSGPLDRGIFSGPLENSTSTEFQRSFSHGGGFNSRSRSRKSRLIRILRTAISKSIHRGQNSIVAPIKPVKEPDWIVLPEKHNENLTVSSLNFSSEGSLEDDDSMESQNLQWAQGKAGEDRVHVVVSEEHGWVFVGIYDGFNGPDAPDYLLSNLYSSVHKELKGLLWDEKLDSAGVAAPATSPVRSENPCLETRDLERNRVSDACSQCVEQENHPCVSGEGKSGLNSRKRKGKNLRGKFRGAAEKWEDNQRRWKCEWDRERLELDRRLKEQLNRSGLNGSRSINHSDVLKALSQALKKTEEAYLDIADKMLDENPELALMGSCVLVMLMKGDDVYVMNVGDSRAVLAQKAEPDYWLGKIRQDLERINEEPVHDIEALDCDRAFTSTNLTAFQLSMDHSTSVDEEVQRIRNEHPDDANAVMNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGRSPYINCLPSLHHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFIALQPEGDPAQHLVELLLFRAAKRAGMDFHELLEIPQGDRRKYHDDVSIIVISLEGRIWRSCV 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34000789 34003499 + ClG42_02g0207400.10 Clacu02g2074 244142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2074 714 Coils Coil 436 456 - -
Clacu02g2074 714 FunFam probable protein phosphatase 2C 4 224 710 - -
Clacu02g2074 714 PANTHER PROTEIN PHOSPHATASE 2C 240 705 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Clacu02g2074 714 Pfam Protein phosphatase 2C 432 498 IPR001932 -
Clacu02g2074 714 Pfam Protein phosphatase 2C 532 655 IPR001932 -
Clacu02g2074 714 Gene3D - 227 710 IPR036457 -
Clacu02g2074 714 ProSiteProfiles PPM-type phosphatase domain profile. 249 705 IPR001932 -
Clacu02g2074 714 SMART PP2C_4 250 703 IPR001932 -
Clacu02g2074 714 CDD PP2Cc 431 705 IPR001932 -
Clacu02g2074 714 SUPERFAMILY PP2C-like 263 706 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2074 Clacu-Chr2:34000789 Clacu05g0701 Clacu-Chr5:5932943 1.10E-62 dispersed
Clacu10g0184 Clacu-Chr10:2126272 Clacu02g2074 Clacu-Chr2:34000789 3.60E-129 transposed
Clacu02g2074 Clacu-Chr2:34000789 Clacu04g0864 Clacu-Chr4:22995890 1.60E-197 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2074 - - - 0.0