Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2076 ATGGCAGAAGGGGAGGATATTCAGCCACTTGTCTGCGACAATGGAACAGGAATGGTCAAGGCTGGCTTTGCTGGAGATGATGCTCCAAGGGCCGTGTTTCCTAGTATAGTAGGTCGACCAAGGCATACTGGTGTGATGGTTGGAATGGGGCAAAAGGATGCGTATGTTGGGGATGAAGCTCAGTCGAAACGTGGTATATTAACACTGAAATATCCCATTGAACATGGTATAGTGAGCAATTGGGATGATATGGAGAAAATTTGGCATCATACCTTTTACAATGAACTCCGAGTGGCTCCTGAAGAGCACCCTGTCCTTCTCACTGAAGCACCTCTGAACCCTAAGGCAAACCGTGAAAAAATGACCCAAATCATGTTCGAAACCTTCAACACTCCTGCCATGTATGTCGCCATTCAGGCTGTTCTTTCCCTCTATGCTAGTGGACGCACAACTGGTATTGTCTTAGATTCTGGAGACGGTGTTAGTCACACTGTCCCAATTTACGAGGGGTATGCTCTTCCCCACGCCATACTCCGTCTCGACCTTGCTGGCCGTGACCTCACTGATGCCCTTATGAAAATCTTGACTGAACGTGGGTATTCCTTCACCACCACAGCTGAGCGTGAAATTGTGAGGGACATGAAGGAAAAACTAGCATATATTGCCCTTGACTTTGAGCAAGAACTTGAAACTTCCAAGACTGGTTCATCTGTTGAGAAGAGTTACGAACTGCCTGATGGGCAGGTAATCACAATTGGTGCAGAACGTTTTCGATGTCCTGAAGTTCTTTTCCAGCCTTCAATGATTGGAATGGAAGCTGCAGGCATTCATGAAACAACATATAACTCCATCATGAAATGTGATGTTGATATCAGGAAGGATCTGTATGGAAATATTGTTCTTAGTGGTGGATCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAAGAAATAACTGCATTAGCCCCTAGCAGCATGAAAATAAAGGTGGTAGCCCCACCCGAAAGAAAGTACAGTGTCTGGATTGGTGGCTCCATTTTGGCCTCCCTCAGCACGTTTCAGCAGATGTGGATCGCAAAGGCAGAGTATGATGAGTCTGGTCCATCCATCGTGCACAGGAAATGCTTCTGA 1134 46.21 MAEGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDFEQELETSKTGSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34013878 34015727 - ClG42_02g0207600.10 Clacu02g2076 244144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2076 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Clacu02g2076 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Clacu02g2076 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Clacu02g2076 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Clacu02g2076 377 PRINTS Actin signature 51 62 IPR004000 -
Clacu02g2076 377 PRINTS Actin signature 238 254 IPR004000 -
Clacu02g2076 377 PRINTS Actin signature 63 85 IPR004000 -
Clacu02g2076 377 PRINTS Actin signature 142 161 IPR004000 -
Clacu02g2076 377 PRINTS Actin signature 28 37 IPR004000 -
Clacu02g2076 377 PRINTS Actin signature 117 130 IPR004000 -
Clacu02g2076 377 FunFam Putative actin-related protein 5 341 369 - -
Clacu02g2076 377 Gene3D - 140 340 - -
Clacu02g2076 377 Pfam Actin 5 377 IPR004000 -
Clacu02g2076 377 FunFam Major actin 259 340 - -
Clacu02g2076 377 SMART actin_3 7 377 IPR004000 -
Clacu02g2076 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Clacu02g2076 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Clacu02g2076 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Clacu02g2076 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Clacu02g2076 377 Gene3D - 10 371 - -
Clacu02g2076 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Clacu02g2076 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Clacu02g2076 377 FunFam Actin, muscle 182 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2076 Clacu-Chr2:34013878 Clacu10g1739 Clacu-Chr10:30918767 3.60E-217 dispersed
Clacu05g2814 Clacu-Chr5:35444380 Clacu02g2076 Clacu-Chr2:34013878 1.60E-59 transposed
Clacu06g1599 Clacu-Chr6:26825772 Clacu02g2076 Clacu-Chr2:34013878 3.60E-75 transposed
Clacu09g0404 Clacu-Chr9:3573225 Clacu02g2076 Clacu-Chr2:34013878 8.50E-55 transposed
Clacu02g2076 Clacu-Chr2:34013878 Clacu04g0866 Clacu-Chr4:23020266 6.20E-217 wgd
Clacu02g2076 Clacu-Chr2:34013878 Clacu09g2010 Clacu-Chr9:34940491 9.90E-215 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2076 K10355 - mdm:103424317 752.281