Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2083 ATGGAGGAGGATAACAATGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCGGGTCATACCGTGAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATACACAAGATGCCGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCGCCACAACGTTCCGGCAGTTCTCAGCCCAGTGAGTCAATGACTCAGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAAAATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATTATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATTCTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCAGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCTCAGTCTCAAACACAACTGTTATTACCACAACCTTCCGCAATTGGCAACTTCGAAAGCTGA 1980 44.95 MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKALASLKEALESTKELLKHGSEGSKIYLALEREQILNQFHEVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSGSSQPSESMTQAERSKYEALLHKLTSGKIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNFES 659
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 34060589 34064212 + ClG42_02g0208300.10 Clacu02g2083 244151
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2083 659 Pfam Mixed lineage kinase domain-like N-terminal domain 29 151 IPR054000 -
Clacu02g2083 659 CDD MLKL_NTD 31 139 - -
Clacu02g2083 659 Gene3D - 340 652 IPR011989 -
Clacu02g2083 659 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu02g2083 659 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Clacu02g2083 659 SMART arm_5 505 545 IPR000225 GO:0005515(InterPro)
Clacu02g2083 659 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Clacu02g2083 659 SMART arm_5 546 586 IPR000225 GO:0005515(InterPro)
Clacu02g2083 659 SMART arm_5 382 422 IPR000225 GO:0005515(InterPro)
Clacu02g2083 659 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu02g2083 659 Coils Coil 95 115 - -
Clacu02g2083 659 FunFam RING-type E3 ubiquitin transferase 337 632 - -
Clacu02g2083 659 SUPERFAMILY RING/U-box 252 332 - -
Clacu02g2083 659 Pfam Armadillo/beta-catenin-like repeat 546 585 IPR000225 GO:0005515(InterPro)
Clacu02g2083 659 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515(InterPro)
Clacu02g2083 659 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515(InterPro)
Clacu02g2083 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 431 IPR000225 GO:0005515(InterPro)
Clacu02g2083 659 PANTHER U BOX DOMAIN-CONTAINING 30 627 - -
Clacu02g2083 659 SUPERFAMILY ARM repeat 354 626 IPR016024 -
Clacu02g2083 659 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu02g2083 659 FunFam RING-type E3 ubiquitin transferase 257 331 - -
Clacu02g2083 659 CDD RING-Ubox_PUB 259 311 IPR045210 -
Clacu02g2083 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Clacu02g2083 659 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Clacu02g2083 659 FunFam RING-type E3 ubiquitin transferase 7 119 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1793 Clacu-Chr1:30119094 Clacu02g2083 Clacu-Chr2:34060589 1.40E-20 dispersed
Clacu02g2083 Clacu-Chr2:34060589 Clacu07g0636 Clacu-Chr7:10691058 1.30E-60 dispersed
Clacu01g2214 Clacu-Chr1:33404944 Clacu02g2083 Clacu-Chr2:34060589 6.30E-14 transposed
Clacu02g1019 Clacu-Chr2:15242675 Clacu02g2083 Clacu-Chr2:34060589 9.30E-88 transposed
Clacu05g2310 Clacu-Chr5:31476280 Clacu02g2083 Clacu-Chr2:34060589 7.30E-122 transposed
Clacu07g0205 Clacu-Chr7:2429542 Clacu02g2083 Clacu-Chr2:34060589 7.20E-37 transposed
Clacu07g0848 Clacu-Chr7:21425276 Clacu02g2083 Clacu-Chr2:34060589 2.20E-24 transposed
Clacu02g2083 Clacu-Chr2:34060589 Clacu03g0161 Clacu-Chr3:1727454 3.10E-163 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2083 K27628 - csv:101221150 1140.18