Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g2083 | ATGGAGGAGGATAACAATGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCGGGTCATACCGTGAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATACACAAGATGCCGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCGCCACAACGTTCCGGCAGTTCTCAGCCCAGTGAGTCAATGACTCAGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAAAATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATTATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATTCTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCAGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACACAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCTCAGTCTCAAACACAACTGTTATTACCACAACCTTCCGCAATTGGCAACTTCGAAAGCTGA | 1980 | 44.95 | MEEDNNGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKALASLKEALESTKELLKHGSEGSKIYLALEREQILNQFHEVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSGSSQPSESMTQAERSKYEALLHKLTSGKIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNFES | 659 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 34060589 | 34064212 | + | ClG42_02g0208300.10 | Clacu02g2083 | 244151 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g2083 | 659 | Pfam | Mixed lineage kinase domain-like N-terminal domain | 29 | 151 | IPR054000 | - | |
Clacu02g2083 | 659 | CDD | MLKL_NTD | 31 | 139 | - | - | |
Clacu02g2083 | 659 | Gene3D | - | 340 | 652 | IPR011989 | - | |
Clacu02g2083 | 659 | ProSiteProfiles | U-box domain profile. | 257 | 331 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu02g2083 | 659 | SMART | arm_5 | 423 | 463 | IPR000225 | GO:0005515(InterPro) | |
Clacu02g2083 | 659 | SMART | arm_5 | 505 | 545 | IPR000225 | GO:0005515(InterPro) | |
Clacu02g2083 | 659 | SMART | arm_5 | 464 | 504 | IPR000225 | GO:0005515(InterPro) | |
Clacu02g2083 | 659 | SMART | arm_5 | 546 | 586 | IPR000225 | GO:0005515(InterPro) | |
Clacu02g2083 | 659 | SMART | arm_5 | 382 | 422 | IPR000225 | GO:0005515(InterPro) | |
Clacu02g2083 | 659 | SMART | Ubox_2 | 261 | 324 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu02g2083 | 659 | Coils | Coil | 95 | 115 | - | - | |
Clacu02g2083 | 659 | FunFam | RING-type E3 ubiquitin transferase | 337 | 632 | - | - | |
Clacu02g2083 | 659 | SUPERFAMILY | RING/U-box | 252 | 332 | - | - | |
Clacu02g2083 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 546 | 585 | IPR000225 | GO:0005515(InterPro) | |
Clacu02g2083 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 382 | 421 | IPR000225 | GO:0005515(InterPro) | |
Clacu02g2083 | 659 | Pfam | Armadillo/beta-catenin-like repeat | 465 | 503 | IPR000225 | GO:0005515(InterPro) | |
Clacu02g2083 | 659 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 393 | 431 | IPR000225 | GO:0005515(InterPro) | |
Clacu02g2083 | 659 | PANTHER | U BOX DOMAIN-CONTAINING | 30 | 627 | - | - | |
Clacu02g2083 | 659 | SUPERFAMILY | ARM repeat | 354 | 626 | IPR016024 | - | |
Clacu02g2083 | 659 | Pfam | U-box domain | 258 | 328 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Clacu02g2083 | 659 | FunFam | RING-type E3 ubiquitin transferase | 257 | 331 | - | - | |
Clacu02g2083 | 659 | CDD | RING-Ubox_PUB | 259 | 311 | IPR045210 | - | |
Clacu02g2083 | 659 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 331 | IPR013083 | - | |
Clacu02g2083 | 659 | Gene3D | - | 9 | 119 | IPR036537 | GO:0007166(InterPro) | |
Clacu02g2083 | 659 | FunFam | RING-type E3 ubiquitin transferase | 7 | 119 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g1793 | Clacu-Chr1:30119094 | Clacu02g2083 | Clacu-Chr2:34060589 | 1.40E-20 | dispersed | |
Clacu02g2083 | Clacu-Chr2:34060589 | Clacu07g0636 | Clacu-Chr7:10691058 | 1.30E-60 | dispersed | |
Clacu01g2214 | Clacu-Chr1:33404944 | Clacu02g2083 | Clacu-Chr2:34060589 | 6.30E-14 | transposed | |
Clacu02g1019 | Clacu-Chr2:15242675 | Clacu02g2083 | Clacu-Chr2:34060589 | 9.30E-88 | transposed | |
Clacu05g2310 | Clacu-Chr5:31476280 | Clacu02g2083 | Clacu-Chr2:34060589 | 7.30E-122 | transposed | |
Clacu07g0205 | Clacu-Chr7:2429542 | Clacu02g2083 | Clacu-Chr2:34060589 | 7.20E-37 | transposed | |
Clacu07g0848 | Clacu-Chr7:21425276 | Clacu02g2083 | Clacu-Chr2:34060589 | 2.20E-24 | transposed | |
Clacu02g2083 | Clacu-Chr2:34060589 | Clacu03g0161 | Clacu-Chr3:1727454 | 3.10E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g2083 | K27628 | - | csv:101221150 | 1140.18 |