Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2084 ATGGCTCACTCTTCTCTTCCAATCTTCTTAGATCCTCCAAATTGGCATCAACCGAATCAGCCAGCAGCTGCAGCAACAAATGATGTTCATCAAGACCCACGTCAGCTTCCGGCAGCATTTCTACAACCGCCGCCGCCGCCAACGGCAGGTCATGGAGGAGGCGGAATCCGGCCGGGTTCTATGGCGTATAGAGCCCGGCTGGCGATGATTCCCCAGCCGGAGGCAGCACTAAAATGCCCTCGTTGTGATTCTACAAACACCAAATTTTGCTATTTCAACAATTACAGCCTTTCTCAGCCGCGCCACTTCTGTAAAGCTTGCCGCCGGTACTGGACCCGCGGCGGCGCTCTTAGAAACGTCCCCGTCGGTGGTGGCTTTCGCAAGAACAAGAAGAAGAAGAAATCTAACCCGTCTAAGTCCCCCACTGCCTCTCAATCTCAAATGGGTAATTCAAGATCAATAATGTCAAGAAGCTGCAACAACATGGAGAGCAGTAGTACAATGAGGGATTTCCCATCACATTCTTCTTTGCCTTCATTAAATATCCTTCCATCTCTTCAACAACATTTTTCTCGTAATTTTGGAAACAACTTCCCCGGAATTCACATCAATAATTCCGCAGTCGCCAGAGAATACGACGTCGAATGGCAACAACAACAACAACCATTCATCGTGGCCGGACTAGAATCTCCGACGACTGCGACAACAACTGCCGCAGCATACACACAAGCTGAAGTCAACAACAACGGCAACAACAACAACTTTGTTGCTAACTCATTACAACAAGCAGCTGGTTTAGTACAATACAATAATAACTGTCATCAACAACTGCAAAATCTGACACCCTTTTCCAGAATTCCTATGAAAAATGAAGAACAAAACCAAGAACAAGGAATATTATTATCAAATTTCTTACGACCAAATGATCACAACAGCCAGTTTTGGGGAAGTAATCATCAAAATTCATGGACGGATCATTTGTCAGCTCTCAGTTCTTCTTCAAGCAGCCATCTTTTGTAA 1020 45.59 MAHSSLPIFLDPPNWHQPNQPAAAATNDVHQDPRQLPAAFLQPPPPPTAGHGGGGIRPGSMAYRARLAMIPQPEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGFRKNKKKKKSNPSKSPTASQSQMGNSRSIMSRSCNNMESSSTMRDFPSHSSLPSLNILPSLQQHFSRNFGNNFPGIHINNSAVAREYDVEWQQQQQPFIVAGLESPTTATTTAAAYTQAEVNNNGNNNNFVANSLQQAAGLVQYNNNCHQQLQNLTPFSRIPMKNEEQNQEQGILLSNFLRPNDHNSQFWGSNHQNSWTDHLSALSSSSSSHLL 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34070678 34072418 - ClG42_02g0208400.10 Clacu02g2084 244152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2084 339 MobiDBLite consensus disorder prediction 36 59 - -
Clacu02g2084 339 MobiDBLite consensus disorder prediction 138 174 - -
Clacu02g2084 339 MobiDBLite consensus disorder prediction 11 30 - -
Clacu02g2084 339 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu02g2084 339 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu02g2084 339 MobiDBLite consensus disorder prediction 121 174 - -
Clacu02g2084 339 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu02g2084 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 264 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2084 Clacu-Chr2:34070678 Clacu02g2141 Clacu-Chr2:34595191 3.00E-29 dispersed
Clacu10g2073 Clacu-Chr10:34128820 Clacu02g2084 Clacu-Chr2:34070678 1.00E-37 wgd
Clacu02g2084 Clacu-Chr2:34070678 Clacu03g0162 Clacu-Chr3:1748121 5.10E-37 wgd
Clacu02g2084 Clacu-Chr2:34070678 Clacu03g0249 Clacu-Chr3:2904109 5.10E-29 wgd
Clacu02g2084 Clacu-Chr2:34070678 Clacu04g0873 Clacu-Chr4:23098820 2.50E-36 wgd
Clacu02g2084 Clacu-Chr2:34070678 Clacu07g0315 Clacu-Chr7:3531525 5.30E-42 wgd
Clacu02g2084 Clacu-Chr2:34070678 Clacu09g2023 Clacu-Chr9:35028519 1.90E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47322 PF02701 zf-Dof 4.80E-33 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2084 - - - 0.0