Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2117 ATGGATTGTGGAAGAAGATTTGGATTGCTGTTCTGGGTTTTGTTTATTTCCTTGCTGCCTTTCATTTCTTGTTTGTTTAAGCCGGTAGATAAGTATCTTATTGACTGTGGATCGGCTTCTAATGTCTCTGTGGGTAATCGTGTTTTCATGGCCGATAATTTGGCTTCACAGCTGCTTTCAACCCCACAACCCATTCTGGCTGATTCTAATACGTCTTCAGTACCCGCTAGTTCTTCTAATGATTCCTTGCTGTTCCAAACGGCTAGAATTTTCACTGGAACATCAAAATACAAGTTTCCAATTAAGGCTGGAAGGCACTGGATCCGTCTCTATTTCTATCCATTTGTGTTTTCTAGCTTCAATATGAGTGCTGCAAATTTTAGTGTTTCGACCCAAGATTTTGTTCTGCTGCGGGATTTAGTTGTAGGGAAGAATCCTATAGTCAAAGAATTCTCTGTGAACATAACGTCAGATACTCTTGAAGTTATCTTTGTTCCTGTTAATGGCTCCATTGCATATGTGAATGCCATAGATGTTACTTCTGTTCCTGACATTGTCATTCTTGATGAAGCCAATTTGTTAGAACCATCTGGTAAATTTCAAGGGCTGTCTAACCAGGCATATGAGACGGTTGCTAGGGTTAATATGGGTGGGCCGAGTGTCGCTCCTGATAATGATCCTCTTACACGAAGTTGGGTCTCTGATGAAGGCTTTCTAGTTAATAAGAATTCTGCAACAAGTTTCTCTAACATTGCAGCTGTTACATACAGTGCTGATGGGGCAGCGCCAGAGATTGCTCCAAATGTTGTCTACGGTACCCTCACTGAGATGAACTCGAAAGATGATCCAAACAGCAATTTCAATGTGACATGGCGGTTTAAAGTGGATCCTGAGTTTCAGTATCTTGTTCGGTTTCACTTCTGTGACATTGTGAGCAAATCTCTACACCAACTTTATTTCAGTGTTTACATTGATACGTGGCTGGTTGTTCAGGATCTAGATCTCAGTATTCCTCTTAACAACGCTCTGAGCACTCCATACTATATGGACTATGTTACAGGGGTGATCAAGAATGACATACTTCTTGTGAGTATTGGCCCATCGACTATAGCCAATGTGTATCCAAATGCCATTCTAAATGGTCTGGAAATCATGAAAATGAACAATTCAGTTGGCAGTCTGAGTGGGGAAGATGCTGTAATTAGTTTTCCAAATACGAATTCTTCAAGTAAGCACATTGGCGTCATTGTGGGTGTGAGTGTTGGGGCATTTGTTGCAGCTATATTGGTTGGGATTCTGTTTATGCTACACAGACGAAAAAGGAAGGGAATGCATCAAGCTCCATCAAAAACGTGGATTTCAATATCCACTGCTGGAGGAATGTCACACACTATGGGAAGTAAATACTCAAATGGCACGATCACAAGTGCTGCTTCCAACTTTGGATATCGCATACCTTTTGCAACAGTTCAAGAGGCTACGAATAACTTTGATGAGAGTTGGGTTATTGGTATTGGTGGGTTTGGGAAAGTATACAAAGGAGTTTTAAATGATGGCACCAAAGTTGCTGTGAAGAGGGGTAATCCACGTTCCCAACAAGGACTGGCAGAGTTTCAAACTGAAATCGAGATGCTGTCTCAGTTCCGTCATCGTCATCTTGTTTCATTGATTGGGTACTGTGATGAGAGGAATGAGATGATATTGATTTATGAGTACATGGAACAGGGGACCCTGAAGAGTCATCTATATGGTTCTGATTTCCCTAGTTTGAGCTGGAAGGAGAGATTAGAGGTCTGCATCGGAGCTGCTAGAGGACTTCATTACCTCCACACTGGTTATGCTAAACCGGTTATTCATCGTGATGTGAAGTCTGCGAATATTTTGCTCGATGAAACTCTCATGGCAAAGGTTGCTGACTTTGGGCTTTCAAAGACTGGACCTGAGATTGACCAAACCCATGTCAGTACAGCTGTGAAAGGAAGTTTTGGGTACCTTGATCCTGAATATTTCAGGAGGCAACAACTGACTGAGAAATCAGATGTTTATTCTTTTGGGGTCGTTTTGTTTGAAGTACTTTGTGCAAGACCTGTCATAGATCCAACCCTTCCCAGAGAAATGGTAAACTTAGCTGAATGGGCAATGAAATGGCAGAAGAAAGGGCAGTTGGACCAAATCATTGATCCTACTTTAGTAGGAAAAATTAGACCAACTTCTCTTAGAAAGTTTGGAGAAACTGCTGAAAAATGCTTGGCTGACTATGGAGTTGACAGGCCATCTATGGGAGACGTGTTATGGAATTTGGAGTATGCACTTCAGCTACAAGAAGCTGTCATTGAAGTTGATCCTGAAGATAACAGTACGAATATGATTGGCGAGCTCTCTCCACAAATTAACAATTTCAATGACATCGAGGCAGGTGTTTCTGCCACACGGTTTGACATTCCGGGTGCGGATGATCTCTCTGGAGTCTCCATGAGTAGGGTGTTCTCTCAGCTGGTGAAATCTGAGGGTAGATGA 2517 41.99 MDCGRRFGLLFWVLFISLLPFISCLFKPVDKYLIDCGSASNVSVGNRVFMADNLASQLLSTPQPILADSNTSSVPASSSNDSLLFQTARIFTGTSKYKFPIKAGRHWIRLYFYPFVFSSFNMSAANFSVSTQDFVLLRDLVVGKNPIVKEFSVNITSDTLEVIFVPVNGSIAYVNAIDVTSVPDIVILDEANLLEPSGKFQGLSNQAYETVARVNMGGPSVAPDNDPLTRSWVSDEGFLVNKNSATSFSNIAAVTYSADGAAPEIAPNVVYGTLTEMNSKDDPNSNFNVTWRFKVDPEFQYLVRFHFCDIVSKSLHQLYFSVYIDTWLVVQDLDLSIPLNNALSTPYYMDYVTGVIKNDILLVSIGPSTIANVYPNAILNGLEIMKMNNSVGSLSGEDAVISFPNTNSSSKHIGVIVGVSVGAFVAAILVGILFMLHRRKRKGMHQAPSKTWISISTAGGMSHTMGSKYSNGTITSAASNFGYRIPFATVQEATNNFDESWVIGIGGFGKVYKGVLNDGTKVAVKRGNPRSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEQGTLKSHLYGSDFPSLSWKERLEVCIGAARGLHYLHTGYAKPVIHRDVKSANILLDETLMAKVADFGLSKTGPEIDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPTLPREMVNLAEWAMKWQKKGQLDQIIDPTLVGKIRPTSLRKFGETAEKCLADYGVDRPSMGDVLWNLEYALQLQEAVIEVDPEDNSTNMIGELSPQINNFNDIEAGVSATRFDIPGADDLSGVSMSRVFSQLVKSEGR 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34298474 34300990 - ClG42_02g0211700.10 Clacu02g2117 244185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2117 838 Gene3D Transferase(Phosphotransferase) domain 1 573 790 - -
Clacu02g2117 838 CDD STKc_IRAK 503 768 - -
Clacu02g2117 838 FunFam receptor-like protein kinase FERONIA 461 572 - -
Clacu02g2117 838 Gene3D - 206 389 - -
Clacu02g2117 838 Gene3D - 31 183 - -
Clacu02g2117 838 Pfam Protein tyrosine and serine/threonine kinase 502 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g2117 838 FunFam Putative receptor-like protein kinase 31 183 - -
Clacu02g2117 838 FunFam Receptor-like protein kinase FERONIA 573 788 - -
Clacu02g2117 838 FunFam Receptor-like protein kinase FERONIA 207 389 - -
Clacu02g2117 838 SMART serkin_6 497 770 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2117 838 Gene3D Phosphorylase Kinase; domain 1 460 572 - -
Clacu02g2117 838 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2117 838 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g2117 838 Pfam Malectin-like domain 34 386 IPR024788 -
Clacu02g2117 838 SUPERFAMILY Protein kinase-like (PK-like) 474 768 IPR011009 -
Clacu02g2117 838 PANTHER OS07G0166700 PROTEIN 484 775 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Clacu02g2117 838 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1402 Clacu-Chr2:27276593 Clacu02g2117 Clacu-Chr2:34298474 7.10E-210 dispersed
Clacu02g2117 Clacu-Chr2:34298474 Clacu06g1704 Clacu-Chr6:27730325 1.40E-216 dispersed
Clacu06g0342 Clacu-Chr6:4153064 Clacu02g2117 Clacu-Chr2:34298474 3.40E-63 dispersed
Clacu02g2117 Clacu-Chr2:34298474 Clacu11g2025 Clacu-Chr11:31231577 4.40E-239 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73370 PF12819 Malectin_like 5.10E-31 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2117 - - - 0.0