Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2127 ATGGAACCGTTGGATAAACCAGCGCCGAAGTCCTCGCCACTCGCGCCATTTCCTCGGGACTCTCGAGGATCCTTAGAGGTTTTCAATCCCTCGGCCACTTACACGTCCAGACCTCGGGCGAACCCCACGTGGCCCAATTGGGTGGAGCCACGTAGCAGTGCGGAGTCGGACTCAGCCAAACTCGTCGCGAAACCGGCGAGTAAAACCGGCGAGGAAATAACGTCATGGATGGCTTTCAAGGACTCAAACCCTTCCCCACAACCCTCATCCCCACTCGCTCAGAAGACAATATCGGCGATTCTCAGCGACAAATCGCCAACCGGGAAAGCGAAATCGGCGGACGAAGTGGGTTCTGCCGCCCTACGCGCTGCGGAGTGGGGATTAGTACTGAAAACCGATACAGAGACTGGGAAGCCACAAGGCGTTGGAGTTCGAACTTCGGGCGGCGATGAACCGAATACGAAACAGGAAAACTCTAGAAGGACTTCGAATAACTCGGTGCGGAGTTCGGGCGACATGTCGGAAGAAGGGGGAAGAGAAAGAGGGATTCCGAGAGTGTCTGAAGATTTGAAAGACGCTCTGTCGACATTTCAACAAACATTTGTTGTGTCCGATGCTACAAAACCTGATTATCCGATTATGTATGCTAGTGCTGGATTTTTCAAGATGACTGGCTATACTTCCAAGGAGGTTATTGGAAGGAACTGTCGATTTTTACAGGGTGCGGATACGGACCCTGAAGATGTGGCTAAGATCCGAGAAGCTTTACAAGCGGGGACGAGTTACTGTGGAAGGTTGTTGAATTACAAGAAAGATGGGACCCCATTTTGGAACCTTCTTACTATTTCACCAATCAAAGATGATGATGGCAAAGTTCTTAAATTTATTGGAATGCAAGTGGAGGTAAGCAAACACACGGAGGGATTTAAAGATAAGATGGTCCGTCCCAATGGCTTGCCAGAATCCTTGATTCGTTATGATGCCCGTCAAAAGGAGATGGCTACAAGTTCGGTAACGGAGCTTGTGCAGGCGGTGAAAAGGCCTCGGTCTGTAAGTGAATATAGGCCTCGGGCTCTAAGTGAATCTATGAACCGCCGGTTATTTAGAAAATCAGGCGGTGGAGGCGGCGGCGGCGGTGACAACAACGACGACAGATTTGAAACCACTATGATTAGGCGAAAGTCAGAGAGTGCAGCACCTCCAACTGGTCGGAAATCGCAGGGAGGAAGTAGAAGATCGATGCAGCGTATCAATGAGCTGCCGGAGAAGAAACCCAAAAAGTCTAGCCGTCGTTCATTTATGGGGATTATGAGGAAAAGTCAATCAAATGTTGAAAGTATTGACATTGAAGATGGTTCCGTGGAGGATAATGAGACCGATGACGATGTTCGGCCAGATAGCGTCGACGACAAAGTAAGGCAGAGGGAAATGAGGAAGGGTATTGATTTAGCTACTACCCTTGAACGTATAGAGAAAAACTTTGTGATTACTGATCCTAGATTGCCTGACAATCCCATTATATTTGCATCTGATAGCTTCCTGGAGCTAACCGAATTTCTGCAAGGTCCTGAAACCGATCGAGCAACCGTCAAGAAAATAAGAGATGCAATCGACAATCAAACAGAAGTTACAGTGCAGCTTATTAACTACACAAAAAGCGGTAAGAAGTTTTGGAACCTGTTTCATCTACAACCTATGCGTGACCAGAAGGGTGAAGTCCAGTATTTTATTGGAGTACAACTCGACGGTAGTCAACACGTGGAACCGCTAAGCAATTGCATACCGGATAATACTGCAAAGGAGGGCGAGAAATTGATAAAAGAAACCGCAGAAAATGTTGATTTGGCAGCCAGAGAACTTCCTGATGCCAATTTGACACCAGAAGATTTATGGGCAAATCACTCTAAGATGGTTCAACCAAAACCTCACAGAAAGGATAGTCCTTCTTGGAAAGCTATCCAGAAGATTTTAGACAGCGGAGAACAGATAGGACTGAAACATTTCAAGCCAGTGAAGCCTTTGGGATCCGGTGATACTGGCAGCGTGCATTTGGTAGAATTGTGTGGGACTGATCAATATTTTGCAATGAAGGCAATGGATAAGGGTGTAATGCTCAACCGCAACAAGGTCCATAGAGCTTGCGCCGAGAGGGAAATACTTGACATGTTGGATCATCCTTTTCTTCCTGCATTATACGCTTCATTTCAGACAAAAACACATGTTTGTCTTATAACTGATTACTGCCCTGGTGGAGAACTCTTTCTGCTTTTGGATAGACAACCCACAAAGGTCATAAAGGAAGATGCTGTAAGGTTTTATGCTGCTGAAGTTATCGTCGCATTGGAATATCTCCATTGTCAAGGGATAATTTACCGGGATCTAAAGCCTGAGAATGTTCTACTCCAAAGCAACGGACACGTTGCCTTGACGGATTTTGACTTGTCATGTTTGACTTCTTGTAAACCTCAGCTTTTGCTTCCAACAACAAATGAGAAGAAAAAGCAATCAAGAGCTCAACAAGCTCCGATCTTTATGGCCGAACCAATGCGAGCATCGAACTCCTTCGTTGGAACCGAAGAGTACATAGCACCGGAAATCATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTATTCTTCTATATGAAATGCTTTATGGATATACACCCTTTAGAGGGAAGACAAGGCAAAAGACATTTGCTAACATTCTTCATAAGGATCTTAAATTTCCAAGAAGTATATCGGCTAGTCTCAATGCAAAGCAGTTAATCTTTAGGTTATTGCATAGAGATCCCAAAAACCGATTAGGTTCTCGAGAAGGAGCTAGCGAAATCAAACGACATCCTTTCTTCCGAGGCGTCAATTGGGCGCTGGTTCGTTGCATGAATCCTCCCGAGCTCGAAGCACCTCTTTTCCAGGCGACCGATGCCGAAAAAGATGCTAATAAGGCATCAGATTTTGATCTAAAAGAACTTGAACTCAGTGTTTTCTGA 3006 45.91 MEPLDKPAPKSSPLAPFPRDSRGSLEVFNPSATYTSRPRANPTWPNWVEPRSSAESDSAKLVAKPASKTGEEITSWMAFKDSNPSPQPSSPLAQKTISAILSDKSPTGKAKSADEVGSAALRAAEWGLVLKTDTETGKPQGVGVRTSGGDEPNTKQENSRRTSNNSVRSSGDMSEEGGRERGIPRVSEDLKDALSTFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALQAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDDGKVLKFIGMQVEVSKHTEGFKDKMVRPNGLPESLIRYDARQKEMATSSVTELVQAVKRPRSVSEYRPRALSESMNRRLFRKSGGGGGGGGDNNDDRFETTMIRRKSESAAPPTGRKSQGGSRRSMQRINELPEKKPKKSSRRSFMGIMRKSQSNVESIDIEDGSVEDNETDDDVRPDSVDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEFLQGPETDRATVKKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLSNCIPDNTAKEGEKLIKETAENVDLAARELPDANLTPEDLWANHSKMVQPKPHRKDSPSWKAIQKILDSGEQIGLKHFKPVKPLGSGDTGSVHLVELCGTDQYFAMKAMDKGVMLNRNKVHRACAEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDRQPTKVIKEDAVRFYAAEVIVALEYLHCQGIIYRDLKPENVLLQSNGHVALTDFDLSCLTSCKPQLLLPTTNEKKKQSRAQQAPIFMAEPMRASNSFVGTEEYIAPEIITGAGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRSISASLNAKQLIFRLLHRDPKNRLGSREGASEIKRHPFFRGVNWALVRCMNPPELEAPLFQATDAEKDANKASDFDLKELELSVF 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34417912 34429527 - ClG42_02g0212700.10 Clacu02g2127 244195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2127 1001 MobiDBLite consensus disorder prediction 347 473 - -
Clacu02g2127 1001 ProSiteProfiles PAS repeat profile. 186 257 IPR000014 -
Clacu02g2127 1001 MobiDBLite consensus disorder prediction 400 414 - -
Clacu02g2127 1001 FunFam Putative LOV domain-containing protein 752 967 - -
Clacu02g2127 1001 ProSiteProfiles Protein kinase domain profile. 668 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2127 1001 MobiDBLite consensus disorder prediction 1 114 - -
Clacu02g2127 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g2127 1001 SMART pac_2 263 305 IPR001610 -
Clacu02g2127 1001 SMART pac_2 544 586 IPR001610 -
Clacu02g2127 1001 FunFam LOV domain-containing protein 468 620 - -
Clacu02g2127 1001 MobiDBLite consensus disorder prediction 76 105 - -
Clacu02g2127 1001 PANTHER FLIPPASE KINASE 1-RELATED 627 977 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu02g2127 1001 MobiDBLite consensus disorder prediction 449 463 - -
Clacu02g2127 1001 MobiDBLite consensus disorder prediction 147 172 - -
Clacu02g2127 1001 NCBIfam PAS domain S-box protein 213 305 IPR000014 -
Clacu02g2127 1001 Gene3D Phosphorylase Kinase; domain 1 667 751 - -
Clacu02g2127 1001 ProSiteProfiles PAC domain profile. 260 314 IPR000700 -
Clacu02g2127 1001 Gene3D PAS domain 200 356 - -
Clacu02g2127 1001 SUPERFAMILY Protein kinase-like (PK-like) 645 976 IPR011009 -
Clacu02g2127 1001 MobiDBLite consensus disorder prediction 350 364 - -
Clacu02g2127 1001 FunFam LOV domain-containing protein 667 751 - -
Clacu02g2127 1001 SUPERFAMILY PYP-like sensor domain (PAS domain) 207 299 IPR035965 -
Clacu02g2127 1001 MobiDBLite consensus disorder prediction 131 184 - -
Clacu02g2127 1001 ProSitePatterns Protein kinases ATP-binding region signature. 674 697 IPR017441 GO:0005524(InterPro)
Clacu02g2127 1001 Gene3D PAS domain 467 620 - -
Clacu02g2127 1001 MobiDBLite consensus disorder prediction 26 53 - -
Clacu02g2127 1001 Gene3D Transferase(Phosphotransferase) domain 1 752 966 - -
Clacu02g2127 1001 SMART serkin_6 668 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2127 1001 MobiDBLite consensus disorder prediction 434 448 - -
Clacu02g2127 1001 Pfam Protein kinase domain 670 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2127 1001 SUPERFAMILY PYP-like sensor domain (PAS domain) 495 582 IPR035965 -
Clacu02g2127 1001 CDD STKc_phototropin_like 666 974 - -
Clacu02g2127 1001 ProSiteProfiles PAC domain profile. 541 595 IPR000700 -
Clacu02g2127 1001 Pfam PAS domain 502 582 IPR000014 -
Clacu02g2127 1001 Pfam PAS domain 207 303 IPR000014 -
Clacu02g2127 1001 CDD PAS 213 302 IPR000014 -
Clacu02g2127 1001 FunFam Putative LOV domain-containing protein 200 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0316 Clacu-Chr2:2871310 Clacu02g2127 Clacu-Chr2:34417912 1.80E-229 dispersed
Clacu02g2127 Clacu-Chr2:34417912 Clacu02g2251 Clacu-Chr2:35616986 5.30E-98 dispersed
Clacu02g2127 Clacu-Chr2:34417912 Clacu02g1101 Clacu-Chr2:20704663 1.50E-302 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73371 PF00069 Pkinase 4.20E-63 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2127 K20715 - csv:101214662 1843.17