Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2129 ATGGGTTGCTTTAGCCATATCAAAAAGCAGAGGAAAAGATTATTAGGGAGCAATGTACAAAGCATTCAACAAGCTTCTTCAGCAAAAGTAAAAGCGGATCTGAAAGTAAAAACAAGGGAAGAAGTAAAAGAGATGGTTTATGAAAATGAGCAGCTGGCGTCAAAAATAAACAAAGAGGTTTCGAGTGAAGCAAAAACAAAGGAAGAGATTGAAACATTTACATTTCAGGAACTTGCAGCCGCAACAAGAAATTTCAAGTCGGATTGCTTTCTGGGTGAAGGAGGATTTGGTAAGGTTTACAAGGGCCACTTGGGAAGAATCAACAAGCTTGTAGCTATAAAGCAACTTGATCGGAATGGGATTCAAGGGGCAAGAGAATTCGTGGTGGAAGTGGTGACATTAAGTTTGGGGAATCATCCAAATCTTGTAAAATTGATTGGGTATTGTGCTGAGGGTGATCAAAGACTCTTGGTTTACGAGTTCATGCCATTAGGCTCATTGGACAAACATTTGCACGATATTCCACTAGGGAAAAAAGTGCTTGATTGGAATACAAGAATGAAGATAGCAGTGGGAGCAGCAAAAGGATTGGAATATTTACACAACAAAATGAGGCCAGCAGTTATATATAGAGACTTAAAATGCTCCAATATTTTGTTGGGTGAAGGTTATTGGCCAAAGCTTTCAGATTTTGGTCTAGCCAAAGTGGGTCCTAGTGGAGATAACACTCATGTCTCAACTAGAGTTATGGGAACTTATGGATATTGTGCACCAGATTATGCAATGACTGGCCAATTGACATTCAAATGTGATATCTATAGCTTTGGAGTTGTTCTATTGGAACTCATCACTGGAAGAAAAGCCATTGACTATACAAGACCTTCAAAGGAGCTGAGTTTGGTAGCATGGGCAAGACCATTGTTCCGAGACCGAAAGAGGTTCTTGGTAATGGCGGACCCAAGGCTGGACGGTCAATTTCCCATTAGAGGATTGTATCAAGCTCTTGCCATTGCAGCGATGTGTCTACAAGAACAACCTACAATGAGGCCACTTATATCTGAAATCGTCACTGCTTTAAATTTCCTTGCTTCTCAAAATTTTACTCAAAGAAGAAGGGATTAA 1122 40.02 MGCFSHIKKQRKRLLGSNVQSIQQASSAKVKADLKVKTREEVKEMVYENEQLASKINKEVSSEAKTKEEIETFTFQELAAATRNFKSDCFLGEGGFGKVYKGHLGRINKLVAIKQLDRNGIQGAREFVVEVVTLSLGNHPNLVKLIGYCAEGDQRLLVYEFMPLGSLDKHLHDIPLGKKVLDWNTRMKIAVGAAKGLEYLHNKMRPAVIYRDLKCSNILLGEGYWPKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKCDIYSFGVVLLELITGRKAIDYTRPSKELSLVAWARPLFRDRKRFLVMADPRLDGQFPIRGLYQALAIAAMCLQEQPTMRPLISEIVTALNFLASQNFTQRRRD 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34441134 34446534 - ClG42_02g0212900.10 Clacu02g2129 244197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2129 373 CDD STKc_IRAK 91 360 - -
Clacu02g2129 373 SUPERFAMILY Protein kinase-like (PK-like) 67 361 IPR011009 -
Clacu02g2129 373 PIRSF ILK 14 372 - -
Clacu02g2129 373 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524(InterPro)
Clacu02g2129 373 FunFam probable serine/threonine-protein kinase RLCKVII 57 161 - -
Clacu02g2129 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g2129 373 Gene3D Transferase(Phosphotransferase) domain 1 162 372 - -
Clacu02g2129 373 Pfam Protein kinase domain 90 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2129 373 FunFam Serine/threonine-protein kinase PBS1 162 373 - -
Clacu02g2129 373 Gene3D Phosphorylase Kinase; domain 1 52 161 - -
Clacu02g2129 373 SMART serkin_6 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2129 373 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2129 373 PANTHER OS07G0668900 PROTEIN 41 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2129 Clacu-Chr2:34441134 Clacu05g0679 Clacu-Chr5:5690129 6.10E-132 dispersed
Clacu10g2037 Clacu-Chr10:33832738 Clacu02g2129 Clacu-Chr2:34441134 4.40E-133 wgd
Clacu02g2129 Clacu-Chr2:34441134 Clacu03g0218 Clacu-Chr3:2422582 3.80E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73372 PF00069 Pkinase 7.10E-42 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2129 - - - 0.0