Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2138 ATGGAAGAGTTCTTAGACAATATACCTCCCATGGATCTGATGCGTTCCGAGAAGATGACTTTTGTCCAGCTTATTATCCCCGTTGAGTCCGCTCATCGAGCCATTTCTTACCTTGGCGAGCTTGGCATCCTTCAATTTAGAGATTTAAACGTGGACAAAAGTCCTTTCCAGAGAACCTTTGTTAACCAGGTAAAGCGATGTGCAGAGATGTCAAGGAAGTTAAGATTTTTCAAAGACCAAATCAGTAAAGCTGGTGTACTGGCATCTACACGCCCAATTCTTCAAGAACATATTGAGCTAGAGGATTTAGAGATACGACTGGCTGATCATGAGCATGAGCTGATTGAAATGAACTCTAACAGCGAGAAACTTCGACAGTCATATAATGAACTATTAGAATTCAAGATGGTATTGCAAAAGGCAAGCGTCTTTCTGGTGTCCAGTAATAGCCATTCAGTTTCAGAAGAAAGGGAGTTGAATGAAAATGTTTTCTTGAATGATAACTATGTTGAGGATGGATCATTACTTGAACAGGAAATGAGACCTGGACCATCCAACCAATCTGGTTTGAGATTTATTTGCGGAATTATTTGTAAATCCAAAGCTCTTAGATTTGAAAGGATGCTGTTTCGTGCAACAAGGGGAAATATGCTTTTCAATCAGGCACCAGCAGATGTACAGATCATGGATCCCATATCTACAGAAATGGTTGAGAAAACAGTATTTGTTGTGTTTTTCTCTGGGGAGCAGGCCAGAAACAAAGTTTTGAAGATCTGTGAGGCTTTTGGAGCAAATTGCTATCCTGTTCCTGAAGATATAACCAAACAAAGGCAGATAACTAGAGAAGTGTCATCTCGCCTCACTGAACTTGAGGCCACTTTAGATGCTGGGATCCGTCACCGAAATGAGGCTCTTGCATCAATAGGGTTTCATTTGATTAAATGGATGAATATGGTAAGAAGGGAAAAGGCTGTATATGATACGTTGAACATGTTGAATTTTGATGTCACTAAAAAATGTCTTGTTGGAGAAGGGTGGTGCCCAATCTTTGCAAAAACTCAGATTCAGGAGGCACTGCAGCGAGCAACATTTGATAGCAGTTCACAAGTGGGGATAATATTTCATGTAATGGATACGGTTGAATCCCCTCCTACATATTTTAGAACAAACCGTTTGACAAATGCTTTTCAAGAAATTGTTGATGCCTATGGTGTTGCTAGATATCAAGAAGCAAATCCTGCAGTTTACAGTGTTATTACATTTCCATTCCTATTCGCAGTGATGTTTGGGGATTGGGGTCATGGAATATGTTTGTTGCTTGGAGCTTTATTTCTTATAGCTCGTGAAAGTAAGCTCAATAATCAGAAATTAGGAAGCTTTATGGAGATGCTATTTGGTGGCCGCTATGTTCTTCTTTTGATGTCCCTATTTTCAATTTATTGTGGGTTGATCTACAATGAGTTCTTCTCTGTTCCGTATCATATATTTGGCTCCTCTGCTTACAAGTGTCGAGATAATTCATGCAGTGATGCACACACTGTTGGCTTAGTTAAATACCGTGATCCCTATCCATTTGGTGTTGACCCAAGCTGGCGTGGAAGTCGTTCGGAACTTCCTTTTCTGAACTCTCTTAAAATGAAGTTGTCTATCTTGTTGGGTATTGCCCAAATGAACTTAGGGATCATATTGAGTTATTTTAATGCCCGTTTTACTGGAAGCTCACTTGATATCAGGTACCAGTTTGTACCACAAGTGATCTTCCTTAACAGTCTTTTTGGATATCTTTCTCTTCTCATTGTCATCAAGTGGTGCACTGGATCTCAAGCAGACCTCTATCATGTGATGATTTACATGTTTTTAAGCCCATTTGATGATCTTGGCGAGAATGAATTGTTTTGGGGCCAAAGACCTCTTCAAATTATCTTGTTGATGTTGGCTATAGTTGCAGTGCCTTGGATGCTTTTTCCTAAACCCTTTATCTTGAAAAAGATTCACACAGAGAGATTTCAAGGTCGTACTTATGGGATCCTTGGAACCTCTGAGGTAGATCTTGAGGTGGAACCTGATTCAGCAAGGCAACACCAAGACGACTTCAATTTTAGTGAGATCTTTGTTCACCAAATGATTCACTCCATAGAATTTGTCTTGGGTGCAGTTTCAAATACAGCATCGTATCTCCGACTTTGGGCTTTAAGCTTGGCGCACTCAGAACTATCAACAGTTTTCTATGAGAAAGTACTCCTCTTAGCTTGGGGGTATAACAGCTTTGTCATCCGGCTGATTGGTTTAGCTGTTTTTTCGTTTGCCACTGCTTTCATACTTCTTATGATGGAGACCCTTAGTGCCTTCCTTCATGCACTGCGTCTTCATTGGGTTGAGTTTCAAAATAAGTTCTACCATGGTGATGGCCACAAGTTCAAACCTTTTTCCTTTGCCTCCATTGACGAGGACGAAGATTAA 2460 40.24 MEEFLDNIPPMDLMRSEKMTFVQLIIPVESAHRAISYLGELGILQFRDLNVDKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGVLASTRPILQEHIELEDLEIRLADHEHELIEMNSNSEKLRQSYNELLEFKMVLQKASVFLVSSNSHSVSEERELNENVFLNDNYVEDGSLLEQEMRPGPSNQSGLRFICGIICKSKALRFERMLFRATRGNMLFNQAPADVQIMDPISTEMVEKTVFVVFFSGEQARNKVLKICEAFGANCYPVPEDITKQRQITREVSSRLTELEATLDAGIRHRNEALASIGFHLIKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALQRATFDSSSQVGIIFHVMDTVESPPTYFRTNRLTNAFQEIVDAYGVARYQEANPAVYSVITFPFLFAVMFGDWGHGICLLLGALFLIARESKLNNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGSSAYKCRDNSCSDAHTVGLVKYRDPYPFGVDPSWRGSRSELPFLNSLKMKLSILLGIAQMNLGIILSYFNARFTGSSLDIRYQFVPQVIFLNSLFGYLSLLIVIKWCTGSQADLYHVMIYMFLSPFDDLGENELFWGQRPLQIILLMLAIVAVPWMLFPKPFILKKIHTERFQGRTYGILGTSEVDLEVEPDSARQHQDDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYNSFVIRLIGLAVFSFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGHKFKPFSFASIDEDED 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34552163 34562430 - ClG42_02g0213800.10 Clacu02g2138 244206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2138 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Clacu02g2138 819 PANTHER VACUOLAR PROTON ATPASES 11 818 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Clacu02g2138 819 Coils Coil 93 127 - -
Clacu02g2138 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0509 Clacu-Chr2:4691372 Clacu02g2138 Clacu-Chr2:34552163 1.50E-297 dispersed
Clacu02g2138 Clacu-Chr2:34552163 Clacu08g1622 Clacu-Chr8:25996397 1.50E-300 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2138 K02154 - csv:101216514 1615.13