Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2145 ATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCTCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA 591 49.07 MEGSDSIATVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNSLWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34638935 34640069 + ClG42_02g0214500.10 Clacu02g2145 244213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2145 196 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Clacu02g2145 196 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Clacu02g2145 196 Coils Coil 114 141 - -
Clacu02g2145 196 MobiDBLite consensus disorder prediction 1 20 - -
Clacu02g2145 196 MobiDBLite consensus disorder prediction 1 30 - -
Clacu02g2145 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2145 Clacu-Chr2:34638935 Clacu03g0243 Clacu-Chr3:2857378 2.40E-55 dispersed
Clacu02g1426 Clacu-Chr2:27634334 Clacu02g2145 Clacu-Chr2:34638935 4.30E-51 transposed
Clacu02g2145 Clacu-Chr2:34638935 Clacu03g0241 Clacu-Chr3:2828966 7.00E-47 wgd
Clacu02g2145 Clacu-Chr2:34638935 Clacu09g2068 Clacu-Chr9:35475937 2.60E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47329 PF03195 LOB 3.80E-41 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2145 - - - 0.0