Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2154 ATGGGGAAAGAGAAGGTTCACATTAACATTGTGGTCATTGGCCATGTCGACTCAGGGAAGTCAACCACCACCGGACACTTGATCTATAAGCTTGGTGGTATTGACAAGCGTGTCATTGAAAGGTTTGAGAAGGAAGCAGCTGAGATGAACAAGAGGTCCTTCAAGTATGCCTGGGTGTTGGACAAGCTTAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTTGAAACCACCAAATACTACTGCACCGTTATTGATGCCCCTGGACATCGCGATTTCATTAAGAACATGATTACTGGTACCTCACAAGCTGACTGTGCTGTTCTCATTATTGACTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGTCAAACCCGTGAGCATGCTTTGCTTGCGTTTACTCTTGGTGTCAAGCAGATGATTTGCTGCTGCAACAAGATGGATGCCACCACCCCGAAGTACTCCAAGGCAAGGTATGATGAAATTGTCAAGGAAGTTTCTTCCTACCTCAAGAAGGTTGGATACAACCCTGACAAAATCCCATTTGTCCCCATCTCTGGTTTCGAAGGAGACAACATGATTGAGAGATCAACCAACCTTGATTGGTACAAGGGTCCAACTCTCCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCAGACAAGCCACTCCGTCTTCCACTTCAGGATGTGTACAAGATCGGTGGTATTGGAACTGTACCAGTCGGACGTGTTGAGACTGGTGTCCTCAAACCTGGAATGGTTGTCACTTTTGGCCCTTCTGGATTGACCACTGAAGTTAAGTCTGTTGAGATGCACCACGAAGCTCTCCCTGAGGCCGTTCCTGGCGACAATGTGGGATTCAATGTAAAGAATGTTGCTGTAAAGGATCTCAAGCGTGGTTTCGTTGCTTCCAACTCAAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACTTCTCAAGTCATTATCATGAACCACCCAGGACAAATTGGCAATGGTTATGCTCCAGTGCTCGATTGCCACACCTCTCACATTGCCGTGAAGTTTGCCGAGATTCAAACCAAGATCGACAGGCGATCTGGTAAGGAACTTGAGAAGGAACCCAAATTCTTAAAGAATGGTGATGCAGGTATGATTAAGATGGTTCCCACCAAGCCCATGGTGGTGGAAACTTTCTCTCAGTACCCTCCTCTCGGACGTTTTGCCGTGAGGGACATGAGACAGACCGTTGCTGTTGGCGTCATCAAGTCCGTCGAAAAGAAGGATCCAAGTGGTGCTAAGGTTACCAAGTCTGCAGTCAAGAAAGGTGGAAAGTGA 1350 47.41 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKEPKFLKNGDAGMIKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAVKKGGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34702121 34703572 + ClG42_02g0215400.10 Clacu02g2154 244222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2154 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Clacu02g2154 449 FunFam Elongation factor 1-alpha 229 316 - -
Clacu02g2154 449 Gene3D Translation factors 229 316 - -
Clacu02g2154 449 CDD EF1_alpha 9 227 - -
Clacu02g2154 449 Gene3D Translation factors 323 430 - -
Clacu02g2154 449 FunFam Elongation factor 1-alpha 323 430 - -
Clacu02g2154 449 FunFam Elongation factor 1-alpha 1 226 - -
Clacu02g2154 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Clacu02g2154 449 PANTHER TRANSLATION FACTOR 4 427 IPR050100 GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER)
Clacu02g2154 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Clacu02g2154 449 CDD EF1_alpha_II 230 320 - -
Clacu02g2154 449 CDD EF1_alpha_III 323 426 - -
Clacu02g2154 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
Clacu02g2154 449 Pfam Elongation factor Tu GTP binding domain 6 221 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g2154 449 SUPERFAMILY Translation proteins 231 321 IPR009000 -
Clacu02g2154 449 Gene3D - 1 226 IPR027417 -
Clacu02g2154 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g2154 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g2154 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g2154 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g2154 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g2154 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Clacu02g2154 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525(InterPro)
Clacu02g2154 449 Pfam GTP-eEF1A C-terminal domain-like 327 427 IPR054696 -
Clacu02g2154 449 NCBIfam translation elongation factor EF-1 subunit alpha 1 433 IPR004539 GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2154 Clacu-Chr2:34702121 Clacu09g2074 Clacu-Chr9:35537636 4.70E-256 dispersed
Clacu05g1904 Clacu-Chr5:28237367 Clacu02g2154 Clacu-Chr2:34702121 2.60E-76 transposed
Clacu06g0816 Clacu-Chr6:9880362 Clacu02g2154 Clacu-Chr2:34702121 2.90E-245 transposed
Clacu02g2154 Clacu-Chr2:34702121 Clacu09g2073 Clacu-Chr9:35525486 1.00E-255 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2154 K03231 - csv:101213221 895.96