Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2159 ATGGCCGGAGGTGCCGCCGGAAGGTCCTTGGAAGAGACGCCGACGTGGGCCGTCGCCGCCGTCTGCTTTGTTTTGGTTCTAATTTCTATCATCATCGAACACATTCTCCATCTCATCGGAAAGTGGCTAAAGAAGAAGCATAAACGAGCTCTCAACGAAGCTCTCGAGAAGATCAAATCAGAGCTGATGTTGTTGGGATTCATATCGCTGCTGCTGACGGTGGGACAAAGCTTAATCACCAATGTTTGTATTCCACCGAACGTGGCTGCCACGTGGCATCCATGTAGTCCTCAAAGAGAACAGGAATTAACCAAACAAGCTGACCTTCTTCTCGATTCTTCCGACCATAATCGCCGGAAACTTCTCGCCGTCTCCCATGTCAATGCCACTTTCCGCCGTGCTCTCGCCGCTGCCGGTGGAACCGATAAATGTGCTGCTAAGGGTAAAGTCCCGTTTGTTTCGGAAGGAGGTATTCATCAGCTACATATATTCATCTTCGTGTTGGCTGTTTTCCACGTTTTGTATTGTGTCTTAACTCTAGCGTTGGGCAATGCCAAGATGAGAAGTTGGAAGTCGTGGGAAAAGGAGACTAGAACCGTGGAGTACCAATTTTCACATGATCCAGAACGGTTTCGATTTGCAAGGGACACATCATTCGGGAGAAGACATTTAAGCTTTTGGACCAAATCTCCTTTCCTCATATGGATTGTTTGTTTCTTCAGACAATTCGTAAGGTCAGTTCCAAAGGTTGATTACTTGACCTTAAGACATGGTTTCGTCATGGCTCATTTGGCACCACAAAGCGATCAAAAATTTGACTTTCAAAAATACATCAAACGCTCTCTTGAAGAAGATTTCAAGGTGGTGGTCAGTATCAGCCCTCCGATCTGGTTCTTCGCTGTTCTCTTCCTACTTTTCAACACCCACGGCTGGAGGGCTTATCTATGGCTACCATTTGTGCCATTAGTTATAGTTTTGTTGGTAGGGACTAAATTGCAAGTGATAATAACGAAAATGGCCCTGAGGATACAAGAAAGAGGGGAAGTGGTGAAGGGAGTGCCAGTGGTAGAGCCAGGGGATGACCTTTTTTGGTTCAATCGCCCTCGTCTTATTCTTTACTTAATCAATTTTGTGCTCTTTCAAAACGCTTTTCAGCTTGCTTTCTTTGCTTGGACTTGGAAAGAATTTGGGATGAAATCTTGTTTCCATGAGCACACAGAGGATTTGGTGATCAGAATAACAATGGGAGTCTTGGTTCAAATCCTTTGCAGTTACGTTACATTGCCTCTTTACGCTCTAGTCACACAGATGGGTTCGACGATGAAGCCCACAATTTTCAATGAAAAAGTAGCGACAGCATTGAGAAACTGGCACCACACAGCTCGCAAACACATCAAGCAAAATCGTGGCTCACTAACGCCAATGTCCAGCCGCCCCACCACCCCCTCCCACCACATGTCGCCGGTCCACCTCCTCCGCCACTACCGGAGCGAATTGGATAGCGTCCATACCTCTCCTAGAAGATCCAATTTCGACAACGACCATTGGGACCCAGATTCCCCCTCTCCTTCCCACCACTTCCACCGTCGCCCCCAAGCCGCCGACGGCTCCGGTTCCTACAGCCACCATCATCGCGATGTGGAGGCCGGTGATGTCGATGTCGTCAATGATTCGACCCGACCCAACCCGACAACCAATTCAAGGGATCCAGATGTTCAACGAACGAATAATAATTCCGAGCAACATGAAATTGATGTGGGACCCAGTGATTTTTCGTTTGATAGAAGAGTTAATAAAGTATGA 1803 47.2 MAGGAAGRSLEETPTWAVAAVCFVLVLISIIIEHILHLIGKWLKKKHKRALNEALEKIKSELMLLGFISLLLTVGQSLITNVCIPPNVAATWHPCSPQREQELTKQADLLLDSSDHNRRKLLAVSHVNATFRRALAAAGGTDKCAAKGKVPFVSEGGIHQLHIFIFVLAVFHVLYCVLTLALGNAKMRSWKSWEKETRTVEYQFSHDPERFRFARDTSFGRRHLSFWTKSPFLIWIVCFFRQFVRSVPKVDYLTLRHGFVMAHLAPQSDQKFDFQKYIKRSLEEDFKVVVSISPPIWFFAVLFLLFNTHGWRAYLWLPFVPLVIVLLVGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLILYLINFVLFQNAFQLAFFAWTWKEFGMKSCFHEHTEDLVIRITMGVLVQILCSYVTLPLYALVTQMGSTMKPTIFNEKVATALRNWHHTARKHIKQNRGSLTPMSSRPTTPSHHMSPVHLLRHYRSELDSVHTSPRRSNFDNDHWDPDSPSPSHHFHRRPQAADGSGSYSHHHRDVEAGDVDVVNDSTRPNPTTNSRDPDVQRTNNNSEQHEIDVGPSDFSFDRRVNKV 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34760712 34767141 + ClG42_02g0215900.10 Clacu02g2159 244227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2159 600 MobiDBLite consensus disorder prediction 557 585 - -
Clacu02g2159 600 MobiDBLite consensus disorder prediction 500 600 - -
Clacu02g2159 600 MobiDBLite consensus disorder prediction 500 532 - -
Clacu02g2159 600 MobiDBLite consensus disorder prediction 539 553 - -
Clacu02g2159 600 MobiDBLite consensus disorder prediction 463 486 - -
Clacu02g2159 600 PANTHER MLO-LIKE PROTEIN 1 2 533 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Clacu02g2159 600 MobiDBLite consensus disorder prediction 467 484 - -
Clacu02g2159 600 Pfam Mlo family 7 495 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2159 K08472 - - csv:101212018 1072.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2159 Clacu-Chr2:34760712 Clacu05g2283 Clacu-Chr5:31197283 6.40E-192 dispersed
Clacu01g2416 Clacu-Chr1:34738407 Clacu02g2159 Clacu-Chr2:34760712 2.80E-122 transposed
Clacu02g1056 Clacu-Chr2:17875631 Clacu02g2159 Clacu-Chr2:34760712 4.20E-118 transposed
Clacu06g0055 Clacu-Chr6:736365 Clacu02g2159 Clacu-Chr2:34760712 1.80E-105 transposed
Clacu02g2159 Clacu-Chr2:34760712 Clacu03g0233 Clacu-Chr3:2666744 2.80E-256 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g290 . Blo03g01272 Bda02g00768 . Bpe01g00178 Bpe08g01330 . . Cmo13g00190 . Cma01g00538 . . Car13g00156 . Cpe05g00830 . Bhi08g00292 . . . Hepe10g1101 . Lcy11g0297 Cla02g02050 Cam02g2174 Cec02g2213 Cco02g2253 Clacu02g2159 Cmu02g2096 Cre02g2410 . . . . . . Chy11g01330 . . Blo14g00166 Bda07g00625 Bda09g00185 . . Bma07g00138 . Sed01g0995 Cmo02g00883 Cmo20g00511 Cma02g00883 Cma20g00477 . Car20g00418 . . Bhi10g00563 Tan05g0268 Cmetu12g1399 . Hepe08g0876 . . . . . . . . . . Csa01g01295 Chy12g00872 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g1917 . 39 589 MLO family AT5G53760 69.2 6.5e-218 753.8
Clacu11g1998 . 5 530 MLO family AT5G53760 67.6 4.7e-208 721.1
Clacu05g1109 . 9 468 MLO family AT5G53760 51.3 4.0e-127 452.2
Clacu03g0235 . 10 466 MLO family AT3G45290 53.8 1.2e-135 480.3
Clacu09g1917 . 39 589 MLO family AT1G26700 68.2 1.0e-212 736.5
Clacu11g1998 . 1 511 MLO family AT1G26700 66.6 3.1e-201 698.4
Clacu05g2283 . 77 572 MLO family AT2G39200 67.5 9.5e-193 670.2
Clacu03g0233 . 8 536 MLO family AT2G39200 63.8 1.2e-192 669.8
Clacu02g2159 . 8 505 MLO family AT2G39200 67.1 1.2e-190 663.3
Clacu02g2159 . 1 416 MLO family AT1G61560 65.9 5.9e-160 560.8
Clacu03g0233 . 1 416 MLO family AT1G61560 66.3 2.7e-157 552.0
Clacu05g2283 . 79 481 MLO family AT1G61560 65.5 1.4e-153 539.7
Clacu01g2168 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Clacu01g2168 . 18 490 MLO family AT2G17430 63.4 3.0e-172 602.1
Clacu10g0013 . 29 490 MLO family AT2G17430 63.4 1.5e-160 563.1
Clacu08g1088 . 4 482 MLO family AT2G17430 58.3 2.9e-151 532.3
Clacu01g2168 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Clacu10g0013 . 5 574 MLO family AT2G17480 59.0 2.6e-177 619.0
Clacu08g1088 . 11 483 MLO family AT2G17480 59.4 1.7e-152 536.6
Clacu03g0233 . 8 463 MLO family AT2G17480 52.6 2.3e-125 446.4
Clacu02g2159 . 8 463 MLO family AT2G17480 50.3 2.5e-124 443.0
Clacu08g1088 . 1 381 MLO family AT1G42560 59.7 5.4e-128 454.5
Clacu01g2168 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Clacu10g0013 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Clacu06g0055 . 6 419 MLO family AT4G24250 54.2 6.0e-117 417.9
Clacu01g2168 . 8 387 MLO family AT5G65970 66.8 8.0e-145 510.8
Clacu10g0013 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Clacu08g1088 . 7 381 MLO family AT5G65970 58.0 1.4e-120 430.3
Clacu02g2159 . 2 381 MLO family AT5G65970 51.8 5.6e-106 381.7
Clacu03g0233 . 2 381 MLO family AT5G65970 50.9 2.2e-102 369.8
Clacu08g1088 . 2 544 MLO family AT2G33670 59.7 6.6e-174 607.4
Clacu01g2168 . 20 470 MLO family AT2G33670 61.6 5.1e-158 554.7
Clacu10g0013 . 29 471 MLO family AT2G33670 58.7 9.6e-141 497.3
Clacu05g2283 . 137 598 MLO family AT1G11310 64.3 2.2e-169 592.4
Clacu03g0233 . 63 506 MLO family AT1G11310 64.9 4.4e-165 578.2
Clacu02g2159 . 63 520 MLO family AT1G11310 62.7 7.0e-163 570.9
Clacu06g0055 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
Clacu06g0055 . 1 508 MLO family AT4G02600 72.9 8.9e-214 740.0
Clacu05g1109 . 5 562 MLO family AT1G11000 67.0 6.3e-213 737.3
Clacu10g0063 . 1 494 MLO family AT1G11000 51.9 1.0e-130 464.2
Clacu06g0055 . 1 508 MLO family AT4G02600 72.9 8.9e-214 740.0
Clacu05g2283 . 137 598 MLO family AT1G11310 64.3 2.2e-169 592.4
Clacu03g0233 . 63 506 MLO family AT1G11310 64.9 4.4e-165 578.2
Clacu02g2159 . 63 520 MLO family AT1G11310 62.7 7.0e-163 570.9
Clacu03g0235 . 10 466 MLO family AT3G45290 53.8 1.2e-135 480.3
Clacu05g1109 . 5 562 MLO family AT1G11000 67.0 6.3e-213 737.3
Clacu10g0063 . 1 494 MLO family AT1G11000 51.9 1.0e-130 464.2
Clacu08g1088 . 2 544 MLO family AT2G33670 59.7 6.6e-174 607.4
Clacu01g2168 . 20 470 MLO family AT2G33670 61.6 5.1e-158 554.7
Clacu10g0013 . 29 471 MLO family AT2G33670 58.7 9.6e-141 497.3
Clacu02g2159 . 1 416 MLO family AT1G61560 65.9 5.9e-160 560.8
Clacu03g0233 . 1 416 MLO family AT1G61560 66.3 2.7e-157 552.0
Clacu05g2283 . 79 481 MLO family AT1G61560 65.5 1.4e-153 539.7
Clacu01g2168 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Clacu01g2168 . 18 490 MLO family AT2G17430 63.4 3.0e-172 602.1
Clacu10g0013 . 29 490 MLO family AT2G17430 63.4 1.5e-160 563.1
Clacu08g1088 . 4 482 MLO family AT2G17430 58.3 2.9e-151 532.3
Clacu01g2168 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Clacu10g0013 . 5 574 MLO family AT2G17480 59.0 2.6e-177 619.0
Clacu08g1088 . 11 483 MLO family AT2G17480 59.4 1.7e-152 536.6
Clacu03g0233 . 8 463 MLO family AT2G17480 52.6 2.3e-125 446.4
Clacu02g2159 . 8 463 MLO family AT2G17480 50.3 2.5e-124 443.0
Clacu08g1088 . 1 381 MLO family AT1G42560 59.7 5.4e-128 454.5
Clacu01g2168 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Clacu10g0013 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Clacu01g2168 . 8 387 MLO family AT5G65970 66.8 8.0e-145 510.8
Clacu10g0013 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Clacu08g1088 . 7 381 MLO family AT5G65970 58.0 1.4e-120 430.3
Clacu02g2159 . 2 381 MLO family AT5G65970 51.8 5.6e-106 381.7
Clacu03g0233 . 2 381 MLO family AT5G65970 50.9 2.2e-102 369.8
Clacu09g1917 . 39 589 MLO family AT5G53760 69.2 6.5e-218 753.8
Clacu11g1998 . 5 530 MLO family AT5G53760 67.6 4.7e-208 721.1
Clacu05g1109 . 9 468 MLO family AT5G53760 51.3 4.0e-127 452.2
Clacu05g2283 . 77 572 MLO family AT2G39200 67.5 9.5e-193 670.2
Clacu03g0233 . 8 536 MLO family AT2G39200 63.8 1.2e-192 669.8
Clacu02g2159 . 8 505 MLO family AT2G39200 67.1 1.2e-190 663.3
Clacu06g0055 . 6 419 MLO family AT4G24250 54.2 6.0e-117 417.9
Clacu09g1917 . 39 589 MLO family AT1G26700 68.2 1.0e-212 736.5
Clacu11g1998 . 1 511 MLO family AT1G26700 66.6 3.1e-201 698.4
Clacu06g0055 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001805 3 2 2 3 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 2 2 4 68