Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2170 ATGGGGAAAGACGTTGAAGTTGCAGAGCAAGGCGAATTCCAAAGCAAAGACTACCAAGACCCACCTCCCGCTCCTCTCATCGACCCTGAAGAACTAACCAAATGGTCTCTTTACAGAGCCGCCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTATGTCACCGTTTTGACCGTCATCGGTTACTCCCACCAAAGCGACCCTTCCGTTTCCACCGACCCCTGTAACGGCGTTGGCATCCTCGGTATCGCTTGGGCCTTCGGCGGTATGATTTTCATCCTTGTTTACTGCACCGCTGGTATCTCCGGTGGCCACATTAACCCCGCCGTCACTTTCGGCCTCTTCTTAGCTCGCAAAGTCTCTCTGGTTCGTGCTCTGTTGTACATCATTGCTCAGTGCGCCGGTGCTATTTGCGGCTGTGGCTTGGTTAGAGCCTTCCAATCTGCTTATTATGTTAGATACAACGGCGGTGCTAATATGCTCAGTAATGGGTATAACAAAGGAACTGGATTAGGCGCTGAAATCATCGGTACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCTCATGTTCCTGTTTTGGCTCCACTCCCAATTGGGTTTGCTGTGTTCATGGTTCATTTGGCTACAATCCCCATCACTGGAACTGGAATTAACCCTGCAAGAAGTTTTGGAGCTGCTGTCATCTTCAACAAAGAGAAAGCCTGGGATGACCAATGGATTTTCTGGGTTGGACCATTTATTGGAGCTGCAATTGCTGCAATTTACCATCAGTATGTGCTCAGAGCTGGAGCTATTAAAGCTCTTGGATCTTTCAGGAGCAATGCTTGA 858 48.72 MGKDVEVAEQGEFQSKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSHQSDPSVSTDPCNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCAGAICGCGLVRAFQSAYYVRYNGGANMLSNGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34829824 34830866 - ClG42_02g0217000.10 Clacu02g2170 244238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2170 285 FunFam Probable aquaporin PIP1-2 24 285 - -
Clacu02g2170 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g2170 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g2170 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g2170 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g2170 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g2170 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g2170 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g2170 285 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g2170 285 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g2170 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Clacu02g2170 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Clacu02g2170 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 2 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Clacu02g2170 285 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Clacu02g2170 285 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1235 Clacu-Chr2:24916977 Clacu02g2170 Clacu-Chr2:34829824 2.90E-105 dispersed
Clacu02g2170 Clacu-Chr2:34829824 Clacu04g0945 Clacu-Chr4:23687465 2.20E-134 dispersed
Clacu04g0565 Clacu-Chr4:18985130 Clacu02g2170 Clacu-Chr2:34829824 2.10E-10 transposed
Clacu10g2005 Clacu-Chr10:33544530 Clacu02g2170 Clacu-Chr2:34829824 1.40E-120 wgd
Clacu02g2170 Clacu-Chr2:34829824 Clacu04g0941 Clacu-Chr4:23657585 1.80E-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2170 K09872 - csv:101215300 547.74