Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2173 ATGGCCATGGCTATAGCTCATCATAGAGAGAGCAGTAGTGGGAGTATAACCAGGCATCTTGATAGTTCTGGGAAGTACGTTCGATACACTGCAGAGCAGGTGGAGGCTCTTGAGCGAGTCTATGCTGAGTGCCCCAAGCCAAGTTCTCTTCGACGCCAGCAGCTTGTTCGGGAGTGCCCAATTCTTTCCAACATAGAACCCAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGATGTAGGGAGAAGCAAAGGAAGGAGGCTTCTCGGCTGCAAACAGTGAACAGAAAATTGAATGCTATGAACAAGTTGTTAATGGAGGAGAATGATCGACTGCAGAAGCAAGTTTCGCAATTGGTGTGTGAAAATGGGTTTATGAGGCAGCAATTGCAAACAGTGCCAGCAGCAGCAACTACTGATGCAAGCTGTGATTCTGTGGTCACCACTCCTCAACCCTCTCGACGTGATGCTAATAACCCAGCTGGACTCCTCTCCATTGCAGAGGAGACCTTAGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCTGTTGGGATCTTTGCCATTTCACAAAGTTGTGGTGGAGTGGCAGCAAGAGCCTGTGGTCTTGTAAGTTTGGAGCCTTCGAAGATTGCAGAGATCCTTAAAGATCGTCCATCGTGGTTTCGTGATTGTCGAAGCCTTGAGGTTTTTACCATGTTTCCAGCTGGAAATGGTGGGACAATTGAACTTGTTTACACACAGGTATATGCTCCAACTACCCTTGCTCCTGCACGTGATTTTTGGACGCTAAGATATACGATAACCTTAGAAAATGGCAGCCTTGTGGTTTGCGAGAGATCGCTCTCTGGTTCTGGTGCCGGTCCTAGTGCAGCTGCTGCTGCTCAGTTTGTGAGAGCTGAGATGCTCCCAAGTGGATATCTGATTCGACCATGTGAGGGTGGTGGGTCCATTATACATATTGTTGATCACCTAAATCTTGAGGCATGGAATGTTCCTGAGGTGTTGCGACCACTTTATGAATCATCAAAAGTAGTGGCTCAGAAGATGACAATAGCAGCACTGCGGTACGTTAGGCAAATAGCCCAGGAGACAAGTGGTGAAGTGGTTTATGGTCTTGGCCGGCAACCTGCTGTTTTGCGGACCTTTAGCCAAAGATTGAGCAGGGGTTTTAATGATGCAGTGAATGGATTTAATGACAATGGATGGTCGTTGATTAATTGTGAAGGTGCTGAGGATGTGGTACTCACTGTGAATTCTACGAAAAATTTTGGCACAACATCGAACCCTGCTAACTCCTTGACATATCCTGGGGGAGTTCTTTGTGCAAAGGCATCCATGCTACTCCAAAATGTTCCTCCTGCTGTGTTAGTTCGTTTCTTGAGAGAACACCGCTCAGAGTGGGCTGATTTCAACATTGATGCATACTCTGCAGCAACCCTTAAGGCCAATTCATATGCATATCCAGGGATGAGACCCACAAGGTTTACTGGTAGCCAAATCATCATGCCACTCGGTCACACAATCGAGCACGAAGAGTTGCTTGAAGTAATTAGACTTGAAGGACATCCTATGGTACAAGAAGATGCTTTTGTTTCGAGAGACATTCATCTTCTTCAGATATGTAGTGGAATTGACGAGAATGCTGTAGGGGCCTGTTCAGAACTCATTTTTGCTCCTATTGATGAGATGTTTCCAGACGATGCTCCATTGCTGCCTTCTGGCTTTCGAATCATCCCATTGGATTCCAGAACAAGTGATGCAAAAGGTAGTCAACGGACTCTGGATCTAACATCGAGTCTTGAAGTGGGTTCTGGAACAAGCAATACTGCTGGAGATGCATCATCAAGTCAGAGTGCTAGATCGGTGTTAACCATAGCATTTCAGTTTCCTTTTGAAAGCAGCATGCAGGATAATGTTGCGAACATGGCACACCAGTACGTACGTAGCGTCATTTCCTCGGTACAGAGAGTTGCGATGGCCATATCTCCATCTGGAGGCAGTCCAGCGCTTGGTCCAAAGCTGTCTCCTGGTTCTCCAGAAGCTCTTACTCTAGCACATTGGATATGCAAGAGCTATAGTTTACAATTGGGAACGGAGTTGATCAAATCAGATTCCTTGGAAAGTGATTCCCTTTTGAAAAATCTCTGGAATCATCAGGATGCAATATTGTGCTGTTCGCTGAAGCAGTCACTGCCTGTTTTTCTGTTTGCAAACCAAGCTGGGCTTGACATGTTGGAGACAACTCTAGTGGCCTTACAAGACATCACGTTGGATAAGATATTTGACGAGTCGGGTCGCAAAGCCTTGTGTGCTGATTTCCCAAAGTTAATGCAGCAGGGATTCGCGTACTTGCCAGGAGGAATCTGTGCATCAACAATGGGACGACACGTTTCATACGAACAAGCCGTTGCATGGAAACCTTCTTCATTGGCTGTCCTCGTCCTCATCCATTGGAGCAGGAGCAGGAGGAATGAAGATGAAGATAAAGATGTTTGTTCTTCAATGTCTAATGCAATGCCTCCTTCTCCAAACTGTGGCCACCGAAAGTTACTAACGTTCGGCTACCAACTAAGATTTGTGCATTGCTTTGGTGGGAAGGGAATGAGTAAGCTTTATCTTTTGTTGGGTTTGACTTTTCTTTTTGAAGTGTTCAATCATTCTCTTTTTACCATAATTGGAAGAGCATTCATTGAGATATGTTCTGAAGTAATCAATAACATATTCGTAGTATTGTAA 2778 45.54 MAMAIAHHRESSSGSITRHLDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTVPAAATTDASCDSVVTTPQPSRRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCGGVAARACGLVSLEPSKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTITLENGSLVVCERSLSGSGAGPSAAAAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWNVPEVLRPLYESSKVVAQKMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDNGWSLINCEGAEDVVLTVNSTKNFGTTSNPANSLTYPGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNIDAYSAATLKANSYAYPGMRPTRFTGSQIIMPLGHTIEHEELLEVIRLEGHPMVQEDAFVSRDIHLLQICSGIDENAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPLDSRTSDAKGSQRTLDLTSSLEVGSGTSNTAGDASSSQSARSVLTIAFQFPFESSMQDNVANMAHQYVRSVISSVQRVAMAISPSGGSPALGPKLSPGSPEALTLAHWICKSYSLQLGTELIKSDSLESDSLLKNLWNHQDAILCCSLKQSLPVFLFANQAGLDMLETTLVALQDITLDKIFDESGRKALCADFPKLMQQGFAYLPGGICASTMGRHVSYEQAVAWKPSSLAVLVLIHWSRSRRNEDEDKDVCSSMSNAMPPSPNCGHRKLLTFGYQLRFVHCFGGKGMSKLYLLLGLTFLFEVFNHSLFTIIGRAFIEICSEVINNIFVVL 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34873527 34879853 + ClG42_02g0217300.10 Clacu02g2173 244241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2173 925 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
Clacu02g2173 925 Coils Coil 80 121 - -
Clacu02g2173 925 SMART START_1 164 374 IPR002913 GO:0008289(InterPro)
Clacu02g2173 925 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
Clacu02g2173 925 SUPERFAMILY Bet v1-like 164 376 - -
Clacu02g2173 925 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
Clacu02g2173 925 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
Clacu02g2173 925 CDD bZIP 77 116 - -
Clacu02g2173 925 CDD START_ArGLABRA2_like 159 375 - -
Clacu02g2173 925 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 19 820 IPR044830 GO:0003700(InterPro)
Clacu02g2173 925 Gene3D - 19 91 - -
Clacu02g2173 925 Pfam MEKHLA domain 697 820 IPR013978 -
Clacu02g2173 925 SUPERFAMILY Homeodomain-like 22 87 IPR009057 -
Clacu02g2173 925 Gene3D - 201 379 IPR023393 -
Clacu02g2173 925 Pfam START domain 165 373 IPR002913 GO:0008289(InterPro)
Clacu02g2173 925 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289(InterPro)
Clacu02g2173 925 MobiDBLite consensus disorder prediction 599 629 - -
Clacu02g2173 925 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1419 Clacu-Chr1:25707401 Clacu02g2173 Clacu-Chr2:34873527 0.00E+00 dispersed
Clacu02g2173 Clacu-Chr2:34873527 Clacu03g0631 Clacu-Chr3:6645556 0.00E+00 dispersed
Clacu02g2173 Clacu-Chr2:34873527 Clacu01g2591 Clacu-Chr1:36186020 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47333 PF01852 START 4.90E-46 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2173 K09338 - csv:101215773 1587.78