Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2176 ATGAAAGAAGCAGAGAAAAATTTAGATCCCCAACTATGGCATGCCTGTGCAGGAGGCATGGTCCAGATGCCTGCGATTAACTCCAAGGTTTTCTACTTCCCTCAGGGTCACGCCGAGCACGCTCAGGCCACCGTCGATTTTACCTCTTCACTCAGAATCCCGCCGCTTATTCCTTGTCGAGTGCTCGCCGTTAAGTTCTTGGCTGACCATGAAACGGATGAGGTTTTTGCGAATATAAGAATGGTTCCACTGGCGAATAACGACCTCAATTTCGAAGAAGAGGGGGGTTTTGGGAGTAATGGGTCTGAGAATAATATGGAGAAACCGGCTTCTTTTGCCAAGACGTTGACTCAATCCGATGCCAACAACGGCGGTGGATTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGCGGCTGGATTACACGGCGGATCCACCGGTTCAGACGGTGATTGCCAAGGACGTTCACGGCGAGGTTTGGAAGTTCCGCCATATTTACAGGGGGACGCCTCGCCGGCATTTGTTGACTACTGGGTGGAGTACTTTTGTGAATCAGAAGAAGCTCGTCGCCGGCGACTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTCGGAATCCGGCGAGCCAAAAGGGCAATTGGGTGTGCCGCCGATCACCCGTACGGATGGAATCCCGGCGGTGGAAATTGCATCCCACCTTATGGTGGATTGACGATGTTTTTAAGAGACGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCCAGTGGTGGTAGTGGGAATTTGAGGGGAAAAGGTAAAGTGAGGCCGGAATCAGTGATGGAAGCGGCGGCGCTTGCGGCGAGTGGACAGCCGTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTCTGTGTGAAAGCCTCATCGGTTCGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTATTCTCCTCCTCCGCCTCCTTCTCTTTGTTTCATTCACTTTCCTCTGCAATTTCTTCTGCACCGGACACTGTCATTAAAGTGACATGGGATGAACCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCGTGGTTAGTTGAACTGGTATCGAACATGCCCGTCATTCAACTATCACCGTTTTCTCCACCGAGAAAGAAGTTTCGACTACCACAACACCCAGACTTTCCCCTCGACACTCAATTCCCACTGTCGTCATTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCAGATTTCCATCTCAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCTAGGATTTCCAATAGATCAGTTACAGACCACAGAGACAGCAGCAGTCAGAACTCATCGGCGTTGCTAAACGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCTGATTCGGTGAAGAAGCATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCGTCTGGTGACATTCGTTCACCTCAAACAGACAAAGGCTCCTTGGATGTGAATCTGGAGAGAGTGAAGTTTCTTTCCGATGGCGCAGGATCCACTTTCAAGCAGCAAATTTCTCCAAACAAGTCACCAGGAGTAGGATTTCCATGGTACCAAGGTTATCAAGCCACTGAACTCGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGCCGGACACTCAACCTTTCAGTAATCGGCTCATATGAAGAACTATACAGGAGGCTCGCGAATATGTTCGGAATGGAAAAACCAGACATTCTTAGCCATGTACTGTACCAAGATGCAACAGGTGCTGTAAAACAAGCTGGAGATAAACCATTCAGTGATTTCATCAAAACAGCTAGAAGACTGACGATACTAACGGACTCGGGTTCGGACAAGCTGGGAAGGACAATGATGGATGGAATGAGAAGTGGTGAAAATGGATTAGATGCTTCAAACAAGACTGGCCCCTTGAGCATATTTGCCTAG 2226 48.25 MKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVFANIRMVPLANNDLNFEEEGGFGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNCIPPYGGLTMFLRDEDNKLSRKGSLSSSGGSGNLRGKGKVRPESVMEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVFSSSASFSLFHSLSSAISSAPDTVIKVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDTQFPLSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNKLQLGLVPSSFQQLDFHSRISNRSVTDHRDSSSQNSSALLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSGDIRSPQTDKGSLDVNLERVKFLSDGAGSTFKQQISPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKLGRTMMDGMRSGENGLDASNKTGPLSIFA 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34909881 34912802 - ClG42_02g0217600.10 Clacu02g2176 244244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2176 741 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677(InterPro)
Clacu02g2176 741 FunFam Auxin response factor 110 214 - -
Clacu02g2176 741 SUPERFAMILY DNA-binding pseudobarrel domain 107 216 IPR015300 -
Clacu02g2176 741 MobiDBLite consensus disorder prediction 514 542 - -
Clacu02g2176 741 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677(InterPro)
Clacu02g2176 741 Gene3D - 629 714 - -
Clacu02g2176 741 SMART B3_2 112 214 IPR003340 GO:0003677(InterPro)
Clacu02g2176 741 Gene3D - 110 214 IPR015300 -
Clacu02g2176 741 Gene3D - 319 375 - -
Clacu02g2176 741 Gene3D - 379 419 - -
Clacu02g2176 741 MobiDBLite consensus disorder prediction 252 272 - -
Clacu02g2176 741 CDD B3_DNA 111 212 IPR003340 GO:0003677(InterPro)
Clacu02g2176 741 MobiDBLite consensus disorder prediction 518 533 - -
Clacu02g2176 741 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu02g2176 741 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 713 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu02g2176 741 ProSiteProfiles PB1 domain profile. 629 709 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2176 Clacu-Chr2:34909881 Clacu08g0903 Clacu-Chr8:19108621 2.50E-206 dispersed
Clacu02g2176 Clacu-Chr2:34909881 Clacu04g0954 Clacu-Chr4:23760534 1.40E-260 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47334 PF02362 B3 1.50E-21 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2176 K14486 - csv:101216500 1350.88