Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2179 ATGGCTTATGGTAGTTCTAGATCCGTAAGGTTCCAAGACGATCTTGAATCATCTGCCCTGCCTACTATCAATGGTGGTGGTGTGACAAAGATCATATACAACATTGATGGCACACAAATACCGGAATCGAGCGGCAAGAGAACTTCGGCTTCTAGGAAGTCTGGAAGATCCCTGAGAGCTAAAGTTTTGTCTAGAGTTTTTTCAGAGGATTATGAGAGAGTACAAAGAAAAATATTGGATCCTAGGGGACAAGTCATAAGGCGATGGAATAAGATATTTTTAGTTGCTTGTTTAGTCTCTTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTGTGGTCAGGGATGAGGTGTGCATCGATATAGGAGTAGGTCTTGAAGTCGTCCTCACAACTATAAGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTTCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTGATAGATCCTTTTAAGATAGCAATAAGGTATCTACGTTATGGTTTCTGGATTGATCTCATTGCAGCCGTGCCAGTTCCCCAGGTACTGATCTGGATTGTAATCCCCAACCTTAGTGGTTCAACAATGACAAACACTAAGAACTTCCTAAGGTTCTTTCTCATATTCCAGTACCTCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAAGACTTTGTATGTTTGACAAATCTTGTAAAGATGGATTCTTCGACTGTCATAAGGTCGATGACCCTCAAAGGGACTCATGGTTTAATATGAGCAACATTAAAAGCTCATGCAATCCAAGTGGTTCCTTTTATCAATTTGGTATATATGGTGATGCAATAACTTTCCATGTCACAACCTCACCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTTAGTTCCTTGGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAATTTTTGCCATTATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATACCTCCAATCAACGACTGTTCGATTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAAGTGCTGCTTAGAAGCCTTCCCTTGGATCTCCGAAGAGACATAAAACGTCACCTTTGCCTTGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGATGCAATATGCGAGAGACTTAAACCTGCCTTGAGCACAGAAGGCACATATCTCGTGCGAGAAGGCGACCCAGTCAATGAAATGTTATTCATAATTAGAGGTCATCTCGACTCGTACACTACTAATGGTGGTAGAACTGGGTTTTTCAACTCTTGTCGTATTGGCCCCGGTGATTTCTGTGGTGAGGAGCTGCTGACTTGGGCTCTCGACCCTCGTCCAAGTGTTGTACTTCCTTCTTCCACTCGAACGGTCAAAGCCATCTCTGAGGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTGAGACACAAGTTCCGATTCTACTCGCATCAATGGCGAACGTGGGCTGCATGCTTTGTTCAAGCAGCATGGCGGAGATATAAGAGACGAAAAGAGCGAGCTGAGCTCAGAGCTAGAGAGAACTATCCGGCTACCAAAGTTGAGTCCCCACTTTCACCACCACCGACATCGAACTTGGATTCACGTTCAGGAAATGCTAGAAGGGGATTGAATAAGCGTTGTGTGTCAGATGCTGGGGTCGTAAGCTCGTTGCAGAAGCCAGAAGAGCCTGACTTCTCTATTGTCGAGGAATAA 2103 43.46 MAYGSSRSVRFQDDLESSALPTINGGGVTKIIYNIDGTQIPESSGKRTSASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPVVRDEVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPFKIAIRYLRYGFWIDLIAAVPVPQVLIWIVIPNLSGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCMFDKSCKDGFFDCHKVDDPQRDSWFNMSNIKSSCNPSGSFYQFGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEEVLLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRARENYPATKVESPLSPPPTSNLDSRSGNARRGLNKRCVSDAGVVSSLQKPEEPDFSIVEE 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34961923 34965255 - ClG42_02g0217900.10 Clacu02g2179 244247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2179 700 Gene3D - 86 404 - -
Clacu02g2179 700 SUPERFAMILY Voltage-gated potassium channels 80 402 - -
Clacu02g2179 700 FunFam Cyclic nucleotide-gated ion channel 1 407 471 - -
Clacu02g2179 700 SMART cnmp_10 480 611 IPR000595 -
Clacu02g2179 700 FunFam Cyclic nucleotide-gated ion channel 1 478 596 - -
Clacu02g2179 700 Pfam Ion transport protein 88 407 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu02g2179 700 CDD CAP_ED 480 611 IPR000595 -
Clacu02g2179 700 MobiDBLite consensus disorder prediction 654 668 - -
Clacu02g2179 700 ProSiteProfiles cAMP/cGMP binding motif profile. 480 577 IPR000595 -
Clacu02g2179 700 Gene3D Helix hairpin bin 407 471 - -
Clacu02g2179 700 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 55 645 - -
Clacu02g2179 700 Gene3D Jelly Rolls 478 598 IPR014710 -
Clacu02g2179 700 PRINTS EAG/ELK/ERG potassium channel family signature 261 271 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g2179 700 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g2179 700 PRINTS EAG/ELK/ERG potassium channel family signature 144 153 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g2179 700 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g2179 700 PRINTS EAG/ELK/ERG potassium channel family signature 375 386 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g2179 700 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Clacu02g2179 700 Pfam Cyclic nucleotide-binding domain 503 563 IPR000595 -
Clacu02g2179 700 MobiDBLite consensus disorder prediction 641 672 - -
Clacu02g2179 700 SUPERFAMILY cAMP-binding domain-like 410 605 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0052 Clacu-Chr1:477478 Clacu02g2179 Clacu-Chr2:34961923 1.60E-186 dispersed
Clacu02g2179 Clacu-Chr2:34961923 Clacu04g0949 Clacu-Chr4:23713646 1.30E-215 dispersed
Clacu02g2179 Clacu-Chr2:34961923 Clacu10g1427 Clacu-Chr10:27418634 9.40E-203 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2179 K05391 - csv:101210775 1365.13