Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2181 ATGCGCTTCAACCAAACTCCCTTTGTCAAGAAATCGTTTTATCCCCGTAGATTGAAGAGCTTCTACTTGGTGGGTACTGGGTATTATGGTTACCACAGGACAAGTAACATTCTCGAGCCGCGCAATCTGAGACAGAGTATTATTTTACTGGTCCCTTTCGGATTCGCAAATGGGTCACTTTCAGAGTGGTGGTCGATGGGCTCTGTTCTGTTCTGTTTTCAGCCTGATTCCAATTCTGAATATATCCGAACCTTTAGCGGTCTCTGTCCACCACAATTCCCTTTCTGTCATTCGGCGTTCTCAATCCACTGTTTTGATTATCTGGATAAAATGAAGCACCAAGTGGCAACCACCTTCATTTCTTTAATGATTTTTATCTTGATGCAACAAGTCATTTGTGCTGATACTTCTGATACTTCTACCCCTGGCAACTGGACGTGTAAATGTTTTTCTCCATACCAAGAAAAACAGAGATTAACACTTGGGGTAAATTGTTCTACATCGTGTTCATGTTCACAAGATGTTGGGGGAATCGGACTGTGGACATGCATCTGTTCAACTGATGGCTTCCCAAAAGTTGTAGCCGAACACCGTGATTCTAACTGTTTTACGTCATGCAACTGTTCTTATGGACTGCTTCCGGAGTCACCATCTTCTAAAAGGCACATTTCAAGCAACGTGGTTGTGATTATTCTCTCACTATGTGTAATAATCATAACATTAGCCTTCTTCATCTTAGTGGTTTGCTATCTTTGTCAAAGGGGCAAGTACCGTGTTCGAACTCCAATATTTTCATTAGATAAGCAAATGAGCTACAACAGTTTGACCAACCTAATTAGTCACAAGAGTTCTTCAACACTGGATAGTAAGGTTATGATGGATTCCCCTGTGAATAACATCAAAGGATGCTTTTTCATGAATCAATGCTTGTTGAGGACTAAATCTTGGAGTATGTGTGGGATCATCATCCAATTCTCATATTCAGAGTTGGAAAATGCAACAAATAAGTTTTCAAGCTCCCATCTTGTGGGACGTGGGGGAAGTAGCTTTGTTTATCGTGGTGAATTGAAGGACGGTAGAACAGTGGCTGTAAAGCGGCTCAATATTCAAGGAGGACTGGATGTGGACTACTTATTCTTAACAGAAATACAATTGTTATCAAGACTTCATCATTGCCACGTGGTTCCTCTACTTGGTTATTGCACAGAATCAAGGGGGAAACATACTGAAAGGCTTTTGGTATATGAATACATGCCAAAGGGTAATCTAAGAGACTGTTTGGATGAAGCTTCAGAGGAGAAAATGGATTGGGGTACTCGTGTTACAATTGCTTTGGGAGCTGCAAGAGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCCAGAATTTTGCATAGAGATGTCAAGTCAACAAATATTCTTTTGGATAAAGATTGGAGAGCAAAAATAACAGACCTTGGTATGGCTACAAGGTTAAGAGGTGATGATCATCCTAGCTGTTCCAGTTCTCCTGCTAGAATGCAGGGGACTTTTGGGTACTTTGCACCGGAGTATGCAATTGTTGGAAGAGCCTCTTTGAAGTCTGATGTCTTTAGTTTTGGAGTTGTTCTTCTTGAGCTTATAACGGGTCAGCATCCCATCCATAAATCAGCAAGCAAAGGGGAGGAAAGCCTTGCAATATGGGCTGCTCCCCGGTTGCAAAATAGTAGGCTAGTCATAACAGAGTTGCCCGACCCAAATTTAGATGGAATGTTCCCGGAGGAAGAGATGCAAATAATGGCTTATTTAGCAAAGGAGTGCTTGCTGTTGGATCCTGATGCTAGACCTACCATGACTGAAGTTGTTCAAGTTCTTTCAAATATAACTCCAGATAAATCAAGAAGGAATAACATTTCTGCAAATGTTTTTCAGGAGAGGCTGTCAGCCTGTAGTGTGGAGAGTGAACCAGACATGGTAAATGACAACATGAATCCTATAGGAAAACAAGTCCATACAGAGGTGATTCCCATTGATGATGTGATGGCAAGGCAAGCTTCATCCCGCAAATGGCTTGATCGCTATTCACTACCATTGGATATTGATCGTTCACTTTGTACTGGCAACTATGACAACCAAGATATTGTTTCTTTTGAGCACATGGAAAGACGTGTACGCTTGGCTTTAAAGGGCCGCAATCTCCAAGTCCAAGCCCCAGATGATGAAACAGTAGACTTGACTGAGCCTCGGTTCGAGTCATTCTGCATCGTGAATGTCAGATCATCTTCATAG 2265 41.94 MRFNQTPFVKKSFYPRRLKSFYLVGTGYYGYHRTSNILEPRNLRQSIILLVPFGFANGSLSEWWSMGSVLFCFQPDSNSEYIRTFSGLCPPQFPFCHSAFSIHCFDYLDKMKHQVATTFISLMIFILMQQVICADTSDTSTPGNWTCKCFSPYQEKQRLTLGVNCSTSCSCSQDVGGIGLWTCICSTDGFPKVVAEHRDSNCFTSCNCSYGLLPESPSSKRHISSNVVVIILSLCVIIITLAFFILVVCYLCQRGKYRVRTPIFSLDKQMSYNSLTNLISHKSSSTLDSKVMMDSPVNNIKGCFFMNQCLLRTKSWSMCGIIIQFSYSELENATNKFSSSHLVGRGGSSFVYRGELKDGRTVAVKRLNIQGGLDVDYLFLTEIQLLSRLHHCHVVPLLGYCTESRGKHTERLLVYEYMPKGNLRDCLDEASEEKMDWGTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKDWRAKITDLGMATRLRGDDHPSCSSSPARMQGTFGYFAPEYAIVGRASLKSDVFSFGVVLLELITGQHPIHKSASKGEESLAIWAAPRLQNSRLVITELPDPNLDGMFPEEEMQIMAYLAKECLLLDPDARPTMTEVVQVLSNITPDKSRRNNISANVFQERLSACSVESEPDMVNDNMNPIGKQVHTEVIPIDDVMARQASSRKWLDRYSLPLDIDRSLCTGNYDNQDIVSFEHMERRVRLALKGRNLQVQAPDDETVDLTEPRFESFCIVNVRSSS 754
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 34980623 34987932 - ClG42_02g0218100.10 Clacu02g2181 244249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2181 754 FunFam receptor-like serine/threonine-protein kinase NCRK 418 629 - -
Clacu02g2181 754 Pfam Protein kinase domain 339 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2181 754 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524(InterPro)
Clacu02g2181 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g2181 754 FunFam receptor-like serine/threonine-protein kinase NCRK 312 417 - -
Clacu02g2181 754 PANTHER OS01G0750732 PROTEIN 183 632 IPR050885 -
Clacu02g2181 754 SUPERFAMILY Protein kinase-like (PK-like) 317 617 IPR011009 -
Clacu02g2181 754 ProSiteProfiles Protein kinase domain profile. 337 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2181 754 Gene3D Transferase(Phosphotransferase) domain 1 418 643 - -
Clacu02g2181 754 CDD STKc_IRAK 343 620 - -
Clacu02g2181 754 SMART serkin_6 337 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2181 754 Gene3D Phosphorylase Kinase; domain 1 312 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2181 Clacu-Chr2:34980623 Clacu11g0675 Clacu-Chr11:6517974 6.80E-66 dispersed
Clacu02g2181 Clacu-Chr2:34980623 Clacu02g2187 Clacu-Chr2:35047241 7.10E-20 proximal
Clacu02g2181 Clacu-Chr2:34980623 Clacu03g0218 Clacu-Chr3:2422582 1.40E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73374 PF00069 Pkinase 1.30E-43 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2181 - - - 0.0