Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2221 ATGGGTCAGATTCAGTACTCTGAGAAGTACTTCGACGACATTTACGAGTACAGGCATGTGGTTCTTCCACCCGAAGTGGCAAAGTTGCTTCCTAAGAATCGCCTGCTCTCGGAAAATGAGTGGCGTGCAATTGGAGTTCAGCAGAGTCGTGGGTGGGTGCACTATGCTATTCATCGGCCTGAGCCGCATATCATGCTATTCAGGAGGCCTCTGAACTACCAACAGCAGCAGGAGAATCTCGCTCAACAAAACGTGCTTGCTGCTAAATGA 270 49.63 MGQIQYSEKYFDDIYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENLAQQNVLAAK 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35302805 35303769 - ClG42_02g0222100.10 Clacu02g2221 244289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2221 89 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 83 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
Clacu02g2221 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Clacu02g2221 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Clacu02g2221 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Clacu02g2221 89 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Clacu02g2221 89 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
Clacu02g2221 89 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Clacu02g2221 89 Gene3D - 1 83 IPR036858 GO:0016538(InterPro)
Clacu02g2221 89 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Clacu02g2221 89 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538(InterPro)
Clacu02g2221 89 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2221 K02219 - - rcu:8275256 169.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1450 Clacu-Chr1:26410914 Clacu02g2221 Clacu-Chr2:35302805 1.10E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1113 Blo03g01072 Blo03g01300 . Bda09g01433 . Bpe08g01297 Bma14g00435 . . Cmo13g00270 . Cma13g00263 . Car13g00200 Sed03g1855 . Cpe20g00722 Bhi08g00132 Tan08g1166 Cmetu12g1345 Lac10g2066 Hepe10g0919 . . Cla02g02112 Cam02g2241 Cec02g2278 Cco02g2320 Clacu02g2221 Cmu02g2156 Cre02g2473 Cone1ag0502 . Cone18ag0244 Cone11ag1331 . Csa06g01245 Chy11g00854 . . . . Bda09g00223 Bpe08g00184 . Bma07g00173 . Sed01g3063 Cmo02g01407 Cmo20g00563 Cma02g01373 . Car02g01152 Car20g00470 Cpe16g00498 . Bhi10g00128 Tan05g0193 Cmetu11g2372 . Hepe08g0936 . . . . . . . . . . Csa01g01406 Chy12g00760 Cme12g00492
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2358 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.7 2.1e-151 531.9
Clacu04g0659 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.5 9.4e-96 347.1
Clacu11g2083 . 11 307 Core Cell Cycle Gene Families AT3G48750 53.0 3.4e-93 338.6
Clacu04g0659 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.8 4.7e-154 540.8
Clacu11g2083 . 11 309 Core Cell Cycle Gene Families AT3G54180 66.0 9.2e-118 420.2
Clacu05g2358 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.1 1.7e-92 336.3
Clacu04g0659 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 2.6e-123 438.3
Clacu11g2083 . 11 309 Core Cell Cycle Gene Families AT2G38620 57.5 2.8e-93 338.6
Clacu11g2083 . 1 307 Core Cell Cycle Gene Families AT1G76540 84.7 2.3e-156 548.5
Clacu04g0659 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 9.3e-118 420.2
Clacu05g2358 . 1 290 Core Cell Cycle Gene Families AT1G76540 53.7 9.4e-94 340.5
Clacu11g2083 . 8 307 Core Cell Cycle Gene Families AT1G20930 89.0 4.5e-160 560.8
Clacu04g0659 . 1 303 Core Cell Cycle Gene Families AT1G20930 67.1 3.4e-120 428.3
Clacu05g2358 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.7 5.4e-97 351.3
Clacu02g2462 . 57 604 Core Cell Cycle Gene Families AT5G10270 71.2 5.9e-215 743.8
Clacu10g1399 . 20 481 Core Cell Cycle Gene Families AT5G10270 77.3 2.2e-209 725.3
Clacu03g1683 . 113 431 Core Cell Cycle Gene Families AT5G10270 51.6 1.0e-97 354.4
Clacu05g1093 . 123 439 Core Cell Cycle Gene Families AT5G10270 54.7 2.3e-97 353.2
Clacu05g0668 . 105 421 Core Cell Cycle Gene Families AT5G10270 52.9 3.8e-97 352.4
Clacu08g0080 . 137 453 Core Cell Cycle Gene Families AT5G10270 53.0 6.6e-97 351.7
Clacu03g0394 . 93 409 Core Cell Cycle Gene Families AT5G10270 53.2 8.6e-97 351.3
Clacu11g0205 . 150 466 Core Cell Cycle Gene Families AT5G10270 52.1 4.3e-96 349.0
Clacu02g1804 . 193 509 Core Cell Cycle Gene Families AT5G10270 52.0 3.1e-94 342.8
Clacu02g1673 . 101 419 Core Cell Cycle Gene Families AT5G10270 51.0 5.2e-94 342.0
Clacu04g1264 . 119 437 Core Cell Cycle Gene Families AT5G10270 50.1 1.4e-91 334.0
Clacu02g1803 . 128 444 Core Cell Cycle Gene Families AT5G10270 50.6 1.9e-91 333.6
Clacu02g2462 . 154 603 Core Cell Cycle Gene Families AT5G64960 72.9 3.7e-179 624.8
Clacu10g1399 . 84 534 Core Cell Cycle Gene Families AT5G64960 70.9 2.5e-172 602.1
Clacu05g1093 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.3 2.1e-81 300.1
Clacu03g0394 . 147 409 Core Cell Cycle Gene Families AT5G64960 52.9 3.5e-81 299.3
Clacu03g1683 . 167 431 Core Cell Cycle Gene Families AT5G64960 50.7 7.9e-81 298.1
Clacu02g1804 . 247 509 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Clacu11g0205 . 204 466 Core Cell Cycle Gene Families AT5G64960 52.9 1.0e-80 297.7
Clacu02g1803 . 182 444 Core Cell Cycle Gene Families AT5G64960 53.2 3.9e-80 295.8
Clacu05g0668 . 159 421 Core Cell Cycle Gene Families AT5G64960 51.8 3.9e-80 295.8
Clacu08g0080 . 191 453 Core Cell Cycle Gene Families AT5G64960 53.2 3.9e-80 295.8
Clacu06g1552 . 8 414 Core Cell Cycle Gene Families AT1G73690 74.7 6.4e-172 600.5
Clacu06g1552 . 12 342 Core Cell Cycle Gene Families AT1G66750 77.7 2.1e-155 545.4
Clacu06g1552 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.5 3.9e-174 607.8
Clacu04g0155 . 32 478 Core Cell Cycle Gene Families AT5G63610 78.9 7.0e-202 700.3
Clacu11g0376 . 1 481 Core Cell Cycle Gene Families AT4G28980 62.4 2.0e-175 612.5
Clacu08g0740 . 5 498 Core Cell Cycle Gene Families AT1G44110 56.8 2.6e-145 512.3
Clacu09g0236 . 225 503 Core Cell Cycle Gene Families AT1G44110 55.2 1.3e-88 323.9
Clacu05g1869 . 206 472 Core Cell Cycle Gene Families AT1G44110 55.1 5.8e-84 308.5
Clacu05g2234 . 300 579 Core Cell Cycle Gene Families AT1G44110 52.5 1.4e-82 303.9
Clacu08g1785 . 85 373 Core Cell Cycle Gene Families AT1G44110 50.2 1.6e-78 290.4
Clacu08g1445 . 286 547 Core Cell Cycle Gene Families AT1G44110 53.4 1.3e-75 280.8
Clacu09g0236 . 224 499 Core Cell Cycle Gene Families AT1G77390 51.4 3.0e-77 286.2
Clacu05g1869 . 206 472 Core Cell Cycle Gene Families AT1G77390 52.4 4.7e-75 278.9
Clacu05g2234 . 305 577 Core Cell Cycle Gene Families AT1G77390 50.5 2.0e-73 273.5
Clacu08g1445 . 286 543 Core Cell Cycle Gene Families AT1G77390 50.8 9.6e-68 254.6
Clacu05g1869 . 16 484 Core Cell Cycle Gene Families AT5G25380 53.7 9.1e-119 424.1
Clacu08g1445 . 119 559 Core Cell Cycle Gene Families AT5G25380 51.6 1.2e-102 370.5
Clacu09g0236 . 223 503 Core Cell Cycle Gene Families AT5G25380 63.7 5.6e-100 361.7
Clacu08g0740 . 216 491 Core Cell Cycle Gene Families AT5G25380 55.1 4.4e-81 298.9
Clacu05g2234 . 304 572 Core Cell Cycle Gene Families AT5G25380 52.0 2.8e-75 279.6
Clacu02g0700 . 119 343 Core Cell Cycle Gene Families AT5G25380 52.2 7.4e-60 228.4
Clacu05g1869 . 3 422 Core Cell Cycle Gene Families AT5G11300 50.6 5.6e-94 341.7
Clacu08g0740 . 207 436 Core Cell Cycle Gene Families AT5G11300 55.7 1.8e-68 256.9
Clacu05g2234 . 300 516 Core Cell Cycle Gene Families AT5G11300 55.3 7.3e-62 235.0
Clacu08g1785 . 92 307 Core Cell Cycle Gene Families AT5G11300 52.3 3.1e-60 229.6
Clacu02g0700 . 119 285 Core Cell Cycle Gene Families AT5G11300 52.4 2.6e-43 173.3
Clacu09g0236 . 189 503 Core Cell Cycle Gene Families AT1G15570 65.0 2.7e-118 422.5
Clacu08g0740 . 188 495 Core Cell Cycle Gene Families AT1G15570 52.1 3.4e-81 299.3
Clacu05g2234 . 288 569 Core Cell Cycle Gene Families AT1G15570 51.4 2.1e-78 290.0
Clacu02g0700 . 119 347 Core Cell Cycle Gene Families AT1G15570 51.3 4.8e-59 225.7
Clacu09g0236 . 4 503 Core Cell Cycle Gene Families AT1G80370 51.4 2.5e-119 426.0
Clacu08g0740 . 217 496 Core Cell Cycle Gene Families AT1G80370 55.7 1.6e-81 300.4
Clacu05g2234 . 300 577 Core Cell Cycle Gene Families AT1G80370 51.4 9.0e-77 284.6
Clacu08g1785 . 92 370 Core Cell Cycle Gene Families AT1G80370 52.0 2.2e-75 280.0
Clacu02g0700 . 119 348 Core Cell Cycle Gene Families AT1G80370 51.9 1.9e-58 223.8
Clacu08g1785 . 5 372 Core Cell Cycle Gene Families AT5G43080 58.5 8.3e-115 410.6
Clacu05g2234 . 204 580 Core Cell Cycle Gene Families AT5G43080 57.0 5.0e-112 401.4
Clacu08g0740 . 218 498 Core Cell Cycle Gene Families AT5G43080 51.2 2.5e-79 292.7
Clacu05g1869 . 208 477 Core Cell Cycle Gene Families AT5G43080 53.7 5.6e-79 291.6
Clacu09g0236 . 226 503 Core Cell Cycle Gene Families AT5G43080 51.3 5.8e-76 281.6
Clacu08g1445 . 283 561 Core Cell Cycle Gene Families AT5G43080 50.4 1.6e-73 273.5
Clacu08g1785 . 1 372 Core Cell Cycle Gene Families AT1G47210 59.4 4.6e-124 441.4
Clacu05g2234 . 204 580 Core Cell Cycle Gene Families AT1G47210 53.7 3.1e-112 402.1
Clacu09g0236 . 226 498 Core Cell Cycle Gene Families AT1G47210 51.8 7.3e-77 284.6
Clacu05g1869 . 208 477 Core Cell Cycle Gene Families AT1G47210 52.2 1.2e-76 283.9
Clacu08g1445 . 283 549 Core Cell Cycle Gene Families AT1G47210 50.6 6.0e-71 265.0
Clacu05g2234 . 300 581 Core Cell Cycle Gene Families AT1G47220 59.2 4.0e-95 345.1
Clacu08g1785 . 78 372 Core Cell Cycle Gene Families AT1G47220 56.9 6.4e-93 337.8
Clacu05g1869 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 6.2e-72 268.1
Clacu05g2234 . 204 580 Core Cell Cycle Gene Families AT1G47230 56.3 5.1e-115 411.4
Clacu08g1785 . 1 372 Core Cell Cycle Gene Families AT1G47230 57.1 1.1e-114 410.2
Clacu02g0700 . 66 351 Core Cell Cycle Gene Families AT1G47230 53.8 3.8e-78 288.9
Clacu08g0740 . 219 500 Core Cell Cycle Gene Families AT1G47230 50.5 1.2e-76 283.9
Clacu09g0236 . 228 498 Core Cell Cycle Gene Families AT1G47230 52.0 1.3e-73 273.9
Clacu05g1869 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.0 2.4e-72 269.6
Clacu04g0627 . 1 449 Core Cell Cycle Gene Families AT4G37490 53.8 9.1e-116 414.1
Clacu04g0627 . 1 342 Core Cell Cycle Gene Families AT5G06150 53.6 6.8e-82 301.2
Clacu02g2308 . 845 1047 Core Cell Cycle Gene Families AT5G06150 63.2 4.9e-64 241.9
Clacu01g2155 . 170 344 Core Cell Cycle Gene Families AT5G06150 54.3 1.0e-45 181.0
Clacu04g0627 . 6 406 Core Cell Cycle Gene Families AT3G11520 57.6 3.8e-105 378.6
Clacu01g2155 . 171 397 Core Cell Cycle Gene Families AT3G11520 52.4 6.8e-62 235.0
Clacu02g2308 . 756 1154 Core Cell Cycle Gene Families AT2G26760 53.3 2.4e-107 386.0
Clacu01g2155 . 8 440 Core Cell Cycle Gene Families AT2G17620 60.0 4.7e-128 454.9
Clacu11g2051 . 167 566 Core Cell Cycle Gene Families AT2G17620 52.2 7.3e-105 377.9
Clacu01g2155 . 24 397 Core Cell Cycle Gene Families AT4G35620 58.7 2.1e-103 372.9
Clacu11g2051 . 160 523 Core Cell Cycle Gene Families AT4G35620 53.4 1.3e-89 327.0
Clacu02g2308 . 880 1106 Core Cell Cycle Gene Families AT4G35620 50.9 4.0e-54 209.1
Clacu11g2051 . 131 566 Core Cell Cycle Gene Families AT1G20610 63.1 1.1e-142 503.4
Clacu01g2155 . 1 440 Core Cell Cycle Gene Families AT1G20610 57.0 2.9e-122 435.6
Clacu11g2051 . 131 463 Core Cell Cycle Gene Families AT1G76310 63.8 1.7e-104 376.3
Clacu01g2155 . 1 336 Core Cell Cycle Gene Families AT1G76310 53.5 6.8e-82 301.2
Clacu02g2308 . 876 1043 Core Cell Cycle Gene Families AT1G76310 52.4 5.9e-41 165.2
Clacu09g2091 . 12 329 Core Cell Cycle Gene Families AT1G70210 65.6 3.1e-111 398.7
Clacu05g2703 . 1 327 Core Cell Cycle Gene Families AT1G70210 63.3 4.4e-105 378.3
Clacu01g1915 . 41 335 Core Cell Cycle Gene Families AT2G22490 54.9 3.9e-83 305.4
Clacu05g1182 . 14 336 Core Cell Cycle Gene Families AT4G34160 52.4 6.0e-79 291.6
Clacu02g0668 . 59 292 Core Cell Cycle Gene Families AT4G34160 52.6 1.5e-61 233.8
Clacu05g2220 . 71 318 Core Cell Cycle Gene Families AT5G67260 51.4 5.3e-65 245.4
Clacu01g1915 . 56 275 Core Cell Cycle Gene Families AT5G65420 60.3 1.1e-69 260.4
Clacu08g1308 . 131 330 Core Cell Cycle Gene Families AT5G65420 55.9 5.3e-61 231.5
Clacu01g1915 . 54 233 Core Cell Cycle Gene Families AT5G10440 59.1 7.2e-56 214.2
Clacu08g1308 . 126 304 Core Cell Cycle Gene Families AT5G10440 53.9 9.2e-51 197.2
Clacu01g1718 . 1 277 Core Cell Cycle Gene Families AT5G27620 67.1 4.3e-104 374.8
Clacu01g1450 . 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 7.3e-44 172.9
Clacu02g2221 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.0e-42 169.1
Clacu01g1450 . 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.4e-39 158.7
Clacu02g2221 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 3.9e-39 157.1
Clacu05g2898 . 300 1318 Core Cell Cycle Gene Families AT3G12280 71.9 0.0e+00 1411.7
Clacu09g0604 . 2 486 Core Cell Cycle Gene Families AT1G02970 59.9 1.2e-159 560.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002221 3 2 1 3 2 2 3 2 2 2 2 2 1 2 2 3 2 3 3 2 1 2 2 0 2 0 2 3 3 1 60