Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2250 ATGATGGGGGCGTTACAATTGCAGCTTGGAATTGACGCAAATCTTGTAAAGCCGCTTTGTCATCTCTGCATTGCTTCATCTCTGAATCCTTCGCCATCGCTTGTTTTTCAACCTATAAAGTACCCCCGTCTTCAGAAATTCAAGCCTTCTCGAAGTTCCCGTCGAACCCATTTCGCAACGCCATCGACATCTTTCACCGTAGCTTCTTCCATGGCCGATTCTTCTCTTTCCAGAACCTCTGAGACAGAGACAAAACCTTTCTCTGTGCTTTTCGTTTGCTTGGGTAACATCTGTAGAAGCCCAGCTGGTGAAGGAGTGTTCAGGAACTTGGTGACGAAGAAGGGTCTCGATTCAAAATTCTTTATCGATTCTGCTGGCACCATTGGTTATCACGAGGGTAATGAGGCCGACCCAAGAATGAGGGCAGCCTCTAAACGACGTGGGATAGCAATAACATCCATCTCGAGGCCAATTCAGCCATCTGATTTTGTAAAATTTGATCTAATTCTTGCCATGGACAAGCAAAACAGAGAGGATATTTTGGGGGCTTTCGAACGGTGGAGAACTAAGAACGGCCTTCCTCCTGATTCACATAAGAAGGTCAAATTAATGTGCTCGTATTGTAAGAAGCACAACGAAACAGAAGTACCGGATCCTTATTACGGTGGGCAACAAGGTTTTGAGAAGGTTCTCGACTTGCTTGAAGATGCATGTGAATCGCTCTTGGAAAGCATCTTGGCAGAAAACAAACACATCTCAGATTAA 765 44.97 MMGALQLQLGIDANLVKPLCHLCIASSLNPSPSLVFQPIKYPRLQKFKPSRSSRRTHFATPSTSFTVASSMADSSLSRTSETETKPFSVLFVCLGNICRSPAGEGVFRNLVTKKGLDSKFFIDSAGTIGYHEGNEADPRMRAASKRRGIAITSISRPIQPSDFVKFDLILAMDKQNREDILGAFERWRTKNGLPPDSHKKVKLMCSYCKKHNETEVPDPYYGGQQGFEKVLDLLEDACESLLESILAENKHISD 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35613968 35616085 - ClG42_02g0225000.10 Clacu02g2250 244318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2250 254 CDD LMWPTP 88 243 - -
Clacu02g2250 254 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 68 251 IPR052995 -
Clacu02g2250 254 SMART LMWPc_2 87 244 IPR023485 -
Clacu02g2250 254 SUPERFAMILY Phosphotyrosine protein phosphatases I 85 245 IPR036196 -
Clacu02g2250 254 PRINTS LMW phosphotyrosine protein phosphatase signature 132 148 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu02g2250 254 PRINTS LMW phosphotyrosine protein phosphatase signature 216 231 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu02g2250 254 PRINTS LMW phosphotyrosine protein phosphatase signature 89 106 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Clacu02g2250 254 FunFam Low molecular weight protein-tyrosine-phosphatase 86 250 - -
Clacu02g2250 254 Gene3D - 70 250 - -
Clacu02g2250 254 Pfam Low molecular weight phosphotyrosine protein phosphatase 89 242 IPR023485 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2250 K25307 - csv:101207515 451.825