Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2251 ATGAACTGGAGTCCCAGCAGAATCTTGATGTTTCGTTTGGAAGTTCTTGGAAGATTGCTGGTGGGTTCAACTCAGCAAATGAGTATGGTTGAATACAGCTTCAGAGGATATCTGGCGCAGCTTTTGATATCCGCATTGTACCTTAGAAATGATTCCTTGGAAATGGAAGAATTTGATTCTGAGAAAGCTGGGACGAGTTATGCGCTAGATGTAGGAAAAAGGTTTTCTATAGAGGATGACATTAATCGTCTGTTTCAAGCAATTGATATCAGAACCTTACGTAAGAGGTCAAGTCAGCAACGTGAAGTTGATAAAGATGCTCTGCGGAAGAGTGCGATGAAAAGACCAGTTAGAGTAGGTTCATCTCACATGGCAGGGATTGGAATTTCTGAACCTGCAAGTTTAAAGCAGGCGTTGAGGGGCTTATGCATATCCCAGGCTGCAGAAATGGCTGCTTCAAAGAGGTTAACAAGGTCTGTAGGTTCACCCAGAATCTCTGAAGCAGGAATTATCAAAAGATTGTATAGGGCGGTGGTGGTTGAGGCCAGTGGATCTGGTGTGCCTGTAAATGAAAGCAAAGCAAATTTGGTAGAAATTTCCATCGTTTCAGAAAGAATTATGTCAACTTTTCAAAATAAGATGCCCGAATTGTCGCATAAAACTGAGGCTGATATACCAAACCAAGGAGCTGAGTCTTCTTCTTCCAAGGATACTGGGGTATCAGAAAAGGCAGGTGTGGATAGATTGATGTCAAAGGATCTTGTTTTTAATACGGCTACTGAGGTGACAAGTATAAAGCCACCTGGTGAGGTGGGAAAACTTAAATCTCCTTCCCTTACTCCTTCTGGTGAGAAGGATCCGGCTGTGAACGGTATGGCTATTTCCTCAACTGAAGATTTGACAAAAAATTCAGTGCCAGAGAAGGAGAGAGGTACAATGGATTGTTTATCTTCTCTATCAAGCTCTGCATCTGTTGTCAGGCCGAACAAATCAGCTTTCAATAATACACGCTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCCCCTAGTATGTCCGATGTCTGCACAGTAACGTTTGACACTGATTTGGCTACCATAGCAGAAAAGTCTGAGAACCAGATGCCAGATAATGCACAGCTTCATGAGATTAAAGAAGAAGATAAATGTTCTTCTGTCTCTAGTAACATAACTTTAGGTGTTGAAGTAAGTGGAAATGTAGGAAACACAGAATCTAGTAGACCTGGTACGTCTCTCAGCTGCTGTAACAGGAACAGACCAACTATTATGCTATCTGATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTGTTGGTGAATGTAGCAGTAGCCCAAGCATCAGTGGGGAAAGCATTCTCAGTGGATCAAGTCGCAGTGGAGTTCGGCCTCACATGTCAAAAGACTTGAAATGGGAGGCTATCCACCACCTCAAGGATCAACATAAATGCCTAGGTCTGAGAAACTTCAAGCTGCTAAAGAGACTTGGTCTCGGGGACATTGGGACTGTCTATCTCTCTGAGCTTTGCGATTCAAGCTGTCTTTTTGCTATGAAAGTGATGGACAAGGAGTTCTTGGCAAGTAGGAAAAAAATAATTCGGGCACAAACTGAGAGAGAGATACTACAAATGCTTGACCATCCATTTCTCCCTACATTATATGCCCATTTCGAGACGGATAAGCACTCATGCCTTGTCATGGACTACTGTCCTGGTGGAGATCTCCACGTACTGCGACAGAAGCAACCATGCAAGAGTTTCTCTGAGCGTGCAGTCAGGTTCTATGTCGCTGAAGTTCTTCTTGCACTGGAGTACTTGCACATGCTAGGAGTTGTTTATCGCGACCTGAAACCCGAAAACGTCCTGGTCCGAGAAGATGGGCACATCATGCTCACGGACTTTGATTTGTCCCTTAGATGTGCTGTTAACCCAACGCTGCTTCAATCATCATCTCCAGTTGTGGAACCCACTAAGAGGACGTTGAATCCCTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCCTGGCAGGTCTCATGCTTCACTCCCAAAGTTCTATCTTCTCCATACAAATCCCGGAGAACGAAAACAGATCATCAGGCTAGTCTATTACCACAGCTTATAGTTGAACCAACAGGTGCACGGTCCAATTCGTTTGTAGGAACCCATGAATACCTCGCTCCTGAGATTGTCAAGGGTGACGGCCATGGGAGCGCTGTTGATTGGTGGACTTATGGGATTTTCCTGTTTGAGCTACTATATGGTAAGACTCCCTTCAAGGGTTCAGGAAATGAGGACACATTAGCGAACATAGTATCCCAAACTCTCAAGTTCCCCGATTGCCCCATAGTTAGTTTTCATGCAAGAGACCTGATCAGATGTCTGCTGACGAAGGAGCCCGAGAACCGATTAGGCTCGACAAAAGGAGCTATCGAGATTAAGCAGCATCCGTTTTTTGAAGGCCTCAATTGGGCTCTAATACGTTGTGCAACACCACCCGAGCTTCCCAAGTTTTTCGACGGTGGAACTAGTGCAATGCCAGTGGATTCTGGGGAGAATACAAAGCGTAGAGATCTCGAAAATATGGAAGCGGATGCAGCAATGTTTGACCTGTTTTAG 2700 44.22 MNWSPSRILMFRLEVLGRLLVGSTQQMSMVEYSFRGYLAQLLISALYLRNDSLEMEEFDSEKAGTSYALDVGKRFSIEDDINRLFQAIDIRTLRKRSSQQREVDKDALRKSAMKRPVRVGSSHMAGIGISEPASLKQALRGLCISQAAEMAASKRLTRSVGSPRISEAGIIKRLYRAVVVEASGSGVPVNESKANLVEISIVSERIMSTFQNKMPELSHKTEADIPNQGAESSSSKDTGVSEKAGVDRLMSKDLVFNTATEVTSIKPPGEVGKLKSPSLTPSGEKDPAVNGMAISSTEDLTKNSVPEKERGTMDCLSSLSSSASVVRPNKSAFNNTRFIKPIFRTKNFVKKKAKLEPNSSPSMSDVCTVTFDTDLATIAEKSENQMPDNAQLHEIKEEDKCSSVSSNITLGVEVSGNVGNTESSRPGTSLSCCNRNRPTIMLSDERSRSREKGMFSQSSKSSVGECSSSPSISGESILSGSSRSGVRPHMSKDLKWEAIHHLKDQHKCLGLRNFKLLKRLGLGDIGTVYLSELCDSSCLFAMKVMDKEFLASRKKIIRAQTEREILQMLDHPFLPTLYAHFETDKHSCLVMDYCPGGDLHVLRQKQPCKSFSERAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPTLLQSSSPVVEPTKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVLSSPYKSRRTKTDHQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGDGHGSAVDWWTYGIFLFELLYGKTPFKGSGNEDTLANIVSQTLKFPDCPIVSFHARDLIRCLLTKEPENRLGSTKGAIEIKQHPFFEGLNWALIRCATPPELPKFFDGGTSAMPVDSGENTKRRDLENMEADAAMFDLF 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35616986 35620251 - ClG42_02g0225100.10 Clacu02g2251 244319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2251 899 FunFam serine/threonine-protein kinase D6PK-like 598 665 - -
Clacu02g2251 899 MobiDBLite consensus disorder prediction 267 290 - -
Clacu02g2251 899 MobiDBLite consensus disorder prediction 454 486 - -
Clacu02g2251 899 PANTHER FLIPPASE KINASE 1-RELATED 407 870 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu02g2251 899 Gene3D Transferase(Phosphotransferase) domain 1 741 863 - -
Clacu02g2251 899 MobiDBLite consensus disorder prediction 445 487 - -
Clacu02g2251 899 Gene3D Transferase(Phosphotransferase) domain 1 594 662 - -
Clacu02g2251 899 SMART serkin_6 514 846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2251 899 FunFam Serine/threonine-protein kinase D6PK-like 512 597 - -
Clacu02g2251 899 FunFam serine/threonine-protein kinase D6PK-like 741 864 - -
Clacu02g2251 899 Pfam Protein kinase domain 515 664 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2251 899 Pfam Protein kinase domain 743 846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2251 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g2251 899 ProSiteProfiles Protein kinase domain profile. 514 846 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2251 899 CDD STKc_phototropin_like 514 864 - -
Clacu02g2251 899 MobiDBLite consensus disorder prediction 225 240 - -
Clacu02g2251 899 MobiDBLite consensus disorder prediction 220 244 - -
Clacu02g2251 899 SUPERFAMILY Protein kinase-like (PK-like) 489 865 IPR011009 -
Clacu02g2251 899 Gene3D Phosphorylase Kinase; domain 1 512 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2192 Clacu-Chr1:33290963 Clacu02g2251 Clacu-Chr2:35616986 1.80E-149 dispersed
Clacu02g2127 Clacu-Chr2:34417912 Clacu02g2251 Clacu-Chr2:35616986 5.30E-98 dispersed
Clacu02g2251 Clacu-Chr2:35616986 Clacu05g0012 Clacu-Chr5:330238 1.30E-148 dispersed
Clacu02g2251 Clacu-Chr2:35616986 Clacu02g2252 Clacu-Chr2:35633346 7.30E-115 tandem
Clacu02g2382 Clacu-Chr2:36853539 Clacu02g2251 Clacu-Chr2:35616986 3.50E-64 transposed
Clacu03g0644 Clacu-Chr3:6962104 Clacu02g2251 Clacu-Chr2:35616986 5.60E-103 transposed
Clacu02g2251 Clacu-Chr2:35616986 Clacu04g1038 Clacu-Chr4:24662095 4.20E-195 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73377 PF00069 Pkinase 1.30E-36 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2251 - - - 0.0