Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2252 ATGTCTACTGAACCCGGTCCAACATGGCACCCAAATTTTAGGCAAATCGAGCCCTTCCAAAATGGGCCCCCACTGGGCCCAATTAGCCCCCATGACCCGGCCCAATATTTCCTCCTTCAAAAATCACTCCCTTGCCCCTGCCTCGGCTCCTCAAACGCCTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTCTCTCCAATGGAGTCATCTCCCGACGACATCGCCGACGACCTACAAAGCCTCAGCTTCAACTCTACCAACACCAACCGCAGCACAAGCTCCGGCTCCGAGACCACTCTCACCGCCTCCTCCTCCTCCTTTAACATCCCTTCCATTCTCAGCAAGCCCCACGCGCCTTCCTCCGACCCTTGCTGGTCCGCTGTTAACCGGATCCGATCCGAATCTTCGTCTCGTCAACTCGTCTTCTCCGACCTTAAGTTCTTCCACCGTCTTGGCTCTGGCGACATTGGCTCCGTCTACCTCTCCGGCCTCAAGTCCGCTGGAACCGACGGATGTTTGTTTGCAGCGAAGGTAATGGATAAGAAGGAACTAGCGAGTAGGAGTAAAGAAGGCAGAGCAAGGACTGAGAGAGAGATTTTGGAGTCTTTGGACCATCCGTTTCTACCGACGCTCTATGCTAGTATCGACTCGCCGAAGTGGCTCTGTCTCTTGACGGAGTTCTGTCCCGGCGGCGACCTACACGTTCTCCGGCAACGGCAACCTAACAAACGCTTCGATGAACTCGCCGTGAGATTCTATGCATCGGAGATAGTGGTTGCTATCGAGTACCTTCACATGATGGGGATTGTTTACCGTGATCTGAAGCCGGAAAATGTACTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAGGATTCGACGGCGACCCCACAGGTTATCAATGCTAAATATCTGACAAACGGCACCGCCCCGCTAAAGGACTACCAAATTGATGCCCCTCCTTTCACATCATCCTCCTGCATTCTTCCAAACTGTATAGTCCCGGCCGTGTCATGTTTCAACCCAAAACGCAAACGCAAGAAGAAGTCTGGTCACCGTAACGGACCCGAGTTTGTCGCTGAACCGGTTGACGTCCGGTCAATGTCATTTGTTGGCACCCACGAGTACTTGGCCCCGGAGATCGTCTCTGGTGAGGGCCATGGAAGCGCGGTGGACTGGTGGACTCTAGGGGTGTTTGTGTTTGAGTTGTTTTATGGAGTGACACCTTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAACATAGTGGCTAGAGCTCTTGAGTTCCCTAAAGAACCAGCGGTGCCAACGGCAGCGAAGGACCTCATCTCTCAGTTATTGATCAAAGACCCGGCGAGACGGTTGGGATCGACGACAGGGTCGTCGGCAATCAAGCACCATTCATTTTTTCAAGGAGTAAATTGGGCATTATTGAGATGTACGTCGCCACCATTTATTCCACCACCTTTTAGTAGAGAAAAAATTGCATCGGATGAAAGCTGCACAGAGGCTCCAGTGGAAAGCCGCCTCTTTCCTGTACTTCCCATGGTACACTGTCATCCGTTCCCTGCCTTGGTGTCATCAGAGATGTACGGAAGGCATACATCTGATCAAGTTGAGGGCTTGACACGGCAAAGTAGCTGGCAATGGCTGATAGGTCATGGATGA 1704 52.0 MSTEPGPTWHPNFRQIEPFQNGPPLGPISPHDPAQYFLLQKSLPCPCLGSSNAFPSSSSSSSSSSSSLSPMESSPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSFNIPSILSKPHAPSSDPCWSAVNRIRSESSSRQLVFSDLKFFHRLGSGDIGSVYLSGLKSAGTDGCLFAAKVMDKKELASRSKEGRARTEREILESLDHPFLPTLYASIDSPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVINAKYLTNGTAPLKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPTAAKDLISQLLIKDPARRLGSTTGSSAIKHHSFFQGVNWALLRCTSPPFIPPPFSREKIASDESCTEAPVESRLFPVLPMVHCHPFPALVSSEMYGRHTSDQVEGLTRQSSWQWLIGHG 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35633346 35638298 + ClG42_02g0225200.10 Clacu02g2252 244320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2252 567 SUPERFAMILY Protein kinase-like (PK-like) 127 512 IPR011009 -
Clacu02g2252 567 FunFam serine/threonine-protein kinase D6PK-like 377 500 - -
Clacu02g2252 567 Gene3D Transferase(Phosphotransferase) domain 1 236 307 - -
Clacu02g2252 567 SMART serkin_6 149 482 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2252 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g2252 567 PANTHER FLIPPASE KINASE 1-RELATED 72 504 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu02g2252 567 FunFam serine/threonine-protein kinase D6PKL2 148 235 - -
Clacu02g2252 567 MobiDBLite consensus disorder prediction 1 33 - -
Clacu02g2252 567 MobiDBLite consensus disorder prediction 52 104 - -
Clacu02g2252 567 FunFam serine/threonine-protein kinase D6PK-like 236 303 - -
Clacu02g2252 567 Gene3D Phosphorylase Kinase; domain 1 147 235 - -
Clacu02g2252 567 Gene3D Transferase(Phosphotransferase) domain 1 378 500 - -
Clacu02g2252 567 ProSiteProfiles Protein kinase domain profile. 149 482 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2252 567 Pfam Protein kinase domain 379 482 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2252 567 Pfam Protein kinase domain 152 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2252 Clacu-Chr2:35633346 Clacu05g0012 Clacu-Chr5:330238 3.90E-114 dispersed
Clacu02g2251 Clacu-Chr2:35616986 Clacu02g2252 Clacu-Chr2:35633346 7.30E-115 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73378 PF00069 Pkinase 1.30E-34 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2252 K08286 - csv:101207262 868.996