Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2264 ATGGAAAAGCTCAAACAAGAAGGAGAGAACAGACCCCATCAAAGATTAAAAGTTGCAGTCCCCAAAGACAGAAGATTATTTGTTGAAGTCATAATACAAATTCAGTTTGATTTGCAGAACAACAACAACAACAATGGTTTAAAGAAGGTTTTTTTTTTTTTAATGGGGAGCCAAAGAGTTGAAGAAACTGGTCCTTCATCCCACTATCATCATCACCTTCCATATAATTCACTTCTTTATGGAATCAACAACAATAATCTTTCCTCCACTTTGATCAATCACGATGGACAATCTTTTGATTTTGGAGAATTGGAACAAGCAATTGTGCTACAAGGACTCGGAACCAAGAACAAACTCGATCATCACGAACCTAAACAAAGCTTTTTCTCAGGCAAGCCTGCAGCAACTCTGGAAATGTTTCCTTCTTGGCCAATCAAACACCAACAAACTTCAAGAGGAATTAGTTTGAGAAGAAGAGAAGAGAGCAGTGATGAGTCAGGAGCAGCTGTGAACACTCATACAATAAACAAATCTAATAATCAAGAAGGGCATTTGGAATTGGAAATAGAAAAAGAAGAATCTGAGATGAGTAAAAAGGGTTGTTGTTCATCTTCTTCTTCAGGTCAAGATCAGAGCTTTATTCAAAAGCATCTACAGCAGATTCAACCTGAAATGATACTCAGTGATATTTCAACAACTGCACTTTCATCTCAACATCAATCCCTTCAACAAAAGAGAAAAGGATGTGGTTCCATTTCAACATCACAGAAACAACTTGACGCTAAGACATTGAGACGTTTAGCTCAGAACAGAGAGGCTGCGAGGAAGAGTCGACTAAGGAAAAAGGCTTACGTACAGCAACTCGAGAGCAGTAGAATCAAGCTTACGCAGCTTGAGCAGGACCTTCAACGGGCACGATCTCAGGGTTTGTTTTTAGGTGCCGGCGGTACTGGCGGCGGCATTGTCAGCCCCGCTAGTGCAATTTTTGATATGGAATATGTAAGGTGGTTGGAAGAGGACCATCGACATACAGTGGAGCTGCGTGGGGGACTAGAGGCACATCTGCCTGACGTGGATTTGAGAGTGAGAGTAGATGCATGCATTTGCCATTACAACGAAATTTTTCGACTCAAAGGAGAGGCTGCTAAGTCCGACATCTTCCATCTCATCACCGGAATCTGGATGTCTCCGGCGGAGCGTTGTTTCCTCTGGATCGGTGGATTTCGACCCTCCGATCTCATCAAGATGTTAATGTCACAATTGGATCCAATAACAGAACAACAAGTGATGGAGATTTACAAGCTACAACATTCGTCACAACAAGCTGAAGATGCTTTATCTCAAGGACTTGATCAGCTCCATCGGTCTTTGACCGACATCATCGCCGGCGGTCCGATCATCGACGGCATCAACCACATGGTTTTGGCCATGGACAAGCTCTCTAGTCTCCAAGGCTTTCTCCATCAGGCAGATATTTTAAGACAACAAACGCTTCATCGACTATGTAGGATACTCACGGTTCGACAAGCGGCCAAATGTTTTCTAATCATTGGTGAATATTACAGTAGATTACGAGCTCTAAGCTCCCTATGGTCCTCTCGTCCAAAGGAGGATGAAGATAATTCAAGCCAAACAAGTTTGCATCAACAAGTCCATATGGTTCAACCCTCGCACCATCACTTCTCAAGCTTCTAA 1695 42.54 MEKLKQEGENRPHQRLKVAVPKDRRLFVEVIIQIQFDLQNNNNNNGLKKVFFFLMGSQRVEETGPSSHYHHHLPYNSLLYGINNNNLSSTLINHDGQSFDFGELEQAIVLQGLGTKNKLDHHEPKQSFFSGKPAATLEMFPSWPIKHQQTSRGISLRRREESSDESGAAVNTHTINKSNNQEGHLELEIEKEESEMSKKGCCSSSSSGQDQSFIQKHLQQIQPEMILSDISTTALSSQHQSLQQKRKGCGSISTSQKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGAGGTGGGIVSPASAIFDMEYVRWLEEDHRHTVELRGGLEAHLPDVDLRVRVDACICHYNEIFRLKGEAAKSDIFHLITGIWMSPAERCFLWIGGFRPSDLIKMLMSQLDPITEQQVMEIYKLQHSSQQAEDALSQGLDQLHRSLTDIIAGGPIIDGINHMVLAMDKLSSLQGFLHQADILRQQTLHRLCRILTVRQAAKCFLIIGEYYSRLRALSSLWSSRPKEDEDNSSQTSLHQQVHMVQPSHHHFSSF 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35755549 35763359 + ClG42_02g0226400.10 Clacu02g2264 244332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2264 564 SMART brlzneu 258 335 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g2264 564 MobiDBLite consensus disorder prediction 544 564 - -
Clacu02g2264 564 ProSiteProfiles DOG1 domain profile. 326 534 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Clacu02g2264 564 Coils Coil 175 195 - -
Clacu02g2264 564 MobiDBLite consensus disorder prediction 535 564 - -
Clacu02g2264 564 Gene3D - 261 310 - -
Clacu02g2264 564 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 265 280 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g2264 564 MobiDBLite consensus disorder prediction 148 213 - -
Clacu02g2264 564 Pfam Seed dormancy control 345 419 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Clacu02g2264 564 PANTHER TRANSCRIPTION FACTOR TGA9 201 537 - -
Clacu02g2264 564 Coils Coil 281 308 - -
Clacu02g2264 564 MobiDBLite consensus disorder prediction 167 182 - -
Clacu02g2264 564 MobiDBLite consensus disorder prediction 183 198 - -
Clacu02g2264 564 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 260 304 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g2264 564 SUPERFAMILY Leucine zipper domain 262 305 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g2264 564 MobiDBLite consensus disorder prediction 199 213 - -
Clacu02g2264 564 Pfam bZIP transcription factor 261 303 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g2264 564 FunFam BZIP family transcription factor 261 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1261 Clacu-Chr1:21488141 Clacu02g2264 Clacu-Chr2:35755549 1.60E-145 dispersed
Clacu02g2264 Clacu-Chr2:35755549 Clacu10g1719 Clacu-Chr10:30697355 5.10E-90 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47342 PF14144 DOG1 2.00E-27 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2264 K14431 - csv:101223216 668.307