Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2270 ATGGCGGAAGAACATAGATGCCAAGCGCCGAAACTTTGCGTTAATAACTGTGGATTCTTCGGGAGTCCGGCGACTCAAGATCTCTGTTCAAAATGTTACCGAGATCTGCAGTTAAAGGAACAACAATCCTCCTCCGCTAAACTCGCCTTAAACCAAACCCTAACATCCGCCGCCTCATCGTCCTTTGCGGATGCGGCGTTGTTAAATCCGAAACCGGCTTCATCGGAAGCGAACCAACCTCTGGCGGAGACGAGGACGGAAGTGGTTCCGACGCCGGCGGCAACACAGCAGCAGCCGAGCCGATGTACGACGTGCAGGCGGCGCGTGGGGTTGACGGGGTTCCAGTGCAGGTGCGGGATGGTGTACTGTGGGACTCACCGGTACCCGGAGCAACACGGTTGCGAATTTGACTTCAAGCGGATGGGGAAGGAGCAGATCGCGAAGGCGAATCCGGTGGTGAAAGGGGAGAAACTGCAGAAGATCTGA 486 55.97 MAEEHRCQAPKLCVNNCGFFGSPATQDLCSKCYRDLQLKEQQSSSAKLALNQTLTSAASSSFADAALLNPKPASSEANQPLAETRTEVVPTPAATQQQPSRCTTCRRRVGLTGFQCRCGMVYCGTHRYPEQHGCEFDFKRMGKEQIAKANPVVKGEKLQKI 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35801228 35801713 - ClG42_02g0227000.10 Clacu02g2270 244338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2270 161 ProSiteProfiles Zinc finger AN1-type profile. 96 142 IPR000058 GO:0008270(InterPro)
Clacu02g2270 161 PANTHER AN1-TYPE ZINC FINGER PROTEIN 8 161 IPR050652 -
Clacu02g2270 161 SMART A20_3 10 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Clacu02g2270 161 Pfam AN1-like Zinc finger 102 138 IPR000058 GO:0008270(InterPro)
Clacu02g2270 161 Gene3D - 1 61 - -
Clacu02g2270 161 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Clacu02g2270 161 SUPERFAMILY AN1-like Zinc finger 88 156 IPR035896 -
Clacu02g2270 161 FunFam Zinc finger AN1-type containing 6 74 157 - -
Clacu02g2270 161 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Clacu02g2270 161 Gene3D - 73 157 IPR035896 -
Clacu02g2270 161 SMART AN1_Zf_4 102 139 IPR000058 GO:0008270(InterPro)
Clacu02g2270 161 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2270 Clacu-Chr2:35801228 Clacu04g1050 Clacu-Chr4:24761200 3.40E-39 dispersed
Clacu02g2270 Clacu-Chr2:35801228 Clacu01g0354 Clacu-Chr1:3521901 4.30E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2270 - - - 0.0