Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2289 ATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTGCCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCCGGACCCTCGACTTTCCGATCAAGAACCTGACGCCATCGTAGTCAAATCTCCACAATTGAAGAGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAATTGATAGAGCTGCCGGTCCTAGATTTACTGAGGTTGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATTTTGGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTCGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAAAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTACCGTGGAGGAGCGTGGAATAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTACTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTGCAACAACGATAGTAACAGAGGATACCAGGGGAAAGGAAGTTGAAACACGGGAGCAAGATGTACACAGAATGTGCTCCGATCTAAACGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCTGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTATAGTATTGGCAATGTCAGCTCACCCCAAACCCAGACTCCACTTCCCGATGATGCACCTGATATGCCTTCTACCAATCCTTCTAGCAGCTGA 1389 45.14 MSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLSDQEPDAIVVKSPQLKRKSEVADYEAESIDRAAGPRFTEVVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNFGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLTVEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIVTEDTRGKEVETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIGNVSSPQTQTPLPDDAPDMPSTNPSSS 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35927389 35933837 - ClG42_02g0228900.10 Clacu02g2289 244357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2289 462 CDD E2F_DD 216 322 IPR032198 GO:0046983(InterPro)
Clacu02g2289 462 MobiDBLite consensus disorder prediction 1 53 - -
Clacu02g2289 462 MobiDBLite consensus disorder prediction 90 135 - -
Clacu02g2289 462 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu02g2289 462 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Clacu02g2289 462 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Clacu02g2289 462 MobiDBLite consensus disorder prediction 109 135 - -
Clacu02g2289 462 Gene3D - 212 322 - -
Clacu02g2289 462 Coils Coil 225 252 - -
Clacu02g2289 462 PANTHER TRANSCRIPTION FACTOR E2F 31 417 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0090575(PANTHER)
Clacu02g2289 462 MobiDBLite consensus disorder prediction 1 15 - -
Clacu02g2289 462 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Clacu02g2289 462 Gene3D - 134 207 IPR036388 -
Clacu02g2289 462 MobiDBLite consensus disorder prediction 434 462 - -
Clacu02g2289 462 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
Clacu02g2289 462 FunFam E2F transcription factor 1 134 207 - -
Clacu02g2289 462 Coils Coil 156 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1485 Clacu-Chr1:26943156 Clacu02g2289 Clacu-Chr2:35927389 4.60E-09 dispersed
Clacu02g2289 Clacu-Chr2:35927389 Clacu08g1601 Clacu-Chr8:25789362 5.30E-61 dispersed
Clacu02g2289 Clacu-Chr2:35927389 Clacu04g1090 Clacu-Chr4:25111008 7.70E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47347 PF16421 E2F_CC-MB 1.40E-34 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2289 K06620 - csv:101219318 891.723