Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2303 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 528 42.61 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36101771 36107700 - ClG42_02g0230300.10 Clacu02g2303 244371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2303 175 SUPERFAMILY HMG-box 111 159 IPR036910 -
Clacu02g2303 175 CDD HMG-box_SF 120 156 - -
Clacu02g2303 175 MobiDBLite consensus disorder prediction 58 97 - -
Clacu02g2303 175 Gene3D High mobility group box domain 102 161 IPR036910 -
Clacu02g2303 175 MobiDBLite consensus disorder prediction 98 115 - -
Clacu02g2303 175 MobiDBLite consensus disorder prediction 58 122 - -
Clacu02g2303 175 FunFam axial regulator YABBY 5-like 104 162 - -
Clacu02g2303 175 Pfam YABBY protein 7 166 IPR006780 GO:0007275(InterPro)
Clacu02g2303 175 PANTHER PROTEIN YABBY 6-RELATED 6 173 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0387 Clacu-Chr1:3915633 Clacu02g2303 Clacu-Chr2:36101771 5.30E-44 dispersed
Clacu02g2303 Clacu-Chr2:36101771 Clacu06g1211 Clacu-Chr6:22794077 5.30E-46 dispersed
Clacu02g2303 Clacu-Chr2:36101771 Clacu11g0446 Clacu-Chr11:4204253 5.70E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47349 PF04690 YABBY 1.90E-75 CL0114 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2303 K25796 - csv:101222154 323.939