Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2303 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 528 42.61 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36101771 36107700 - ClG42_02g0230300.10 Clacu02g2303 244371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2303 175 SUPERFAMILY HMG-box 111 159 IPR036910 -
Clacu02g2303 175 CDD HMG-box_SF 120 156 - -
Clacu02g2303 175 MobiDBLite consensus disorder prediction 58 97 - -
Clacu02g2303 175 Gene3D High mobility group box domain 102 161 IPR036910 -
Clacu02g2303 175 MobiDBLite consensus disorder prediction 98 115 - -
Clacu02g2303 175 MobiDBLite consensus disorder prediction 58 122 - -
Clacu02g2303 175 FunFam axial regulator YABBY 5-like 104 162 - -
Clacu02g2303 175 Pfam YABBY protein 7 166 IPR006780 GO:0007275(InterPro)
Clacu02g2303 175 PANTHER PROTEIN YABBY 6-RELATED 6 173 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2303 K25796 - - csv:101222154 323.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0387 Clacu-Chr1:3915633 Clacu02g2303 Clacu-Chr2:36101771 5.30E-44 dispersed
Clacu02g2303 Clacu-Chr2:36101771 Clacu06g1211 Clacu-Chr6:22794077 5.30E-46 dispersed
Clacu02g2303 Clacu-Chr2:36101771 Clacu11g0446 Clacu-Chr11:4204253 5.70E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2577 . 16 154 C2C2-YABBY Transcription Factor Family AT1G69180 56.8 4.2e-38 154.8
Clacu05g2559 . 16 152 C2C2-YABBY Transcription Factor Family AT1G69180 56.9 7.2e-38 154.1
Clacu01g0387 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Clacu02g2303 . 1 175 C2C2-YABBY Transcription Factor Family AT1G08465 65.5 1.5e-54 209.5
Clacu01g0387 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.5e-43 172.9
Clacu06g1211 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.2e-42 169.1
Clacu10g0295 . 22 192 C2C2-YABBY Transcription Factor Family AT1G08465 53.8 4.2e-41 164.9
Clacu11g0446 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.1e-41 164.1
Clacu01g0387 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.3e-50 194.9
Clacu10g0295 . 33 192 C2C2-YABBY Transcription Factor Family AT4G00180 54.9 8.3e-38 154.1
Clacu05g2742 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 1.9e-39 159.8
Clacu06g1211 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.0e-62 236.5
Clacu11g0446 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.2e-61 231.1
Clacu02g2303 . 1 175 C2C2-YABBY Transcription Factor Family AT2G26580 58.9 1.4e-48 189.5
Clacu01g0387 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.1e-44 174.1
Clacu10g0295 . 22 192 C2C2-YABBY Transcription Factor Family AT2G26580 50.3 3.1e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47349 PF04690 YABBY 1.90E-75 CL0114 Clacu TF