Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2304 ATGTCGATTCGAACTTCTCCACATTTCCGAAAGCGAGCGGTGGAAATTTCTCGCGAGCCCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTGCATTCTACAATGGTGAGTTAGGGTTTTCGGCGGATATTAGAAAATGGTTCATGAAAGCACACGATAAAGAGAACGGCAGTGGATCAAAGAAAGCAAAACCCGCTCCAAGCAACTTAGAGAAATCCGCTTCAGCTGAACTACAGTCCGGGAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCATAAGGACAAGGATACAAAAGAAACAGAGGAACCCCCGATCAAACAAAAGTCTCCACAGGATCCTAAGGAATCTCCAGCCAAAAGAAAGTTTCAAATGGATAATGAGGGATCACCAAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGTTGATAATGACGATGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTTTAGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACTGTTTCTTCTCTGAAGCCTAGTGGAAGAGGTAGGGGAGGAAGGGGTTCATCTGCTGCAACCGGTGGTGGTAGAGGCAGAGGTGGTGGGCGAGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCAGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTGCATCAGGCCAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCTGTGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGCCCCGCAAGGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGCTGAATTCTCTAACCTAACATGGACCGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAAAACTTCATAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCCGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAACGCCAGCGACAATCGAGGTAAATCAGATGCCAAGGTTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTGCACTTCAGAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCGGGAGATAGGGGTGGAGTTGCCGATCTGATTGCAAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAGTATGATGATATTCGCCAACGGCTTCTGGGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGACGAAAGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTACAGGCCAAGCGCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGAATTGATTGCCCGTACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACGTTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCACGTTCACATTCTTGCTTCTCGCGAATCCTGCTCAGGGAGGGAACACCTAAGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGGGCCACTACACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGTGTAACCCCCGCAGTCAAAGCTGCTCTGACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACGCTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCAACTGAGGATGCAGTTGAAGGTGCTGTTGGAGACACATTGGCAGAAAGTGACGACGAAAACTCTTTGGACAATGAGGATGCAGAAGACTCCACAAACGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAAATTCAAGTGCGACGAAATCTGGTGGCAGAGGACGAGGAGGTAGAAGTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGAAATGAGACCAAGTCTTCGCCATGGAGCGGTTGACATTTGGGATGATGATTCACCCAACGGACGAGACTGGTTTTTGTAG 3120 43.21 MSIRTSPHFRKRAVEISREPSRTVNLTVEWRFLPFALRLAFYNGELGFSADIRKWFMKAHDKENGSGSKKAKPAPSNLEKSASAELQSGKTGPSGGESTGRRITSKYFASEKHKDKDTKETEEPPIKQKSPQDPKESPAKRKFQMDNEGSPKASPLKKSNKIVDNDDDAVFSSSRKNMSEVTPNKKLKSGSGKGITQKPLEIEASDDEETKGTVSSLKPSGRGRGGRGSSAATGGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGQKAPPRQDPKKSVVKSSVESPTEKNFQKVQAKPRKDLTASASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFIDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKVQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMELIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTGPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVTPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDAVEGAVGDTLAESDDENSLDNEDAEDSTNGEKLQLELQSLNKKGMQVQLDLKGVENSSATKSGGRGRGGRSSQASEKKGGRGSEMRPSLRHGAVDIWDDDSPNGRDWFL 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36125460 36138502 + ClG42_02g0230400.10 Clacu02g2304 244372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2304 1039 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 114 957 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 347 399 - -
Clacu02g2304 1039 SUPERFAMILY post-AAA+ oligomerization domain-like 663 808 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 250 265 - -
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 940 954 - -
Clacu02g2304 1039 Pfam ATPase family associated with various cellular activities (AAA) 459 571 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 174 191 - -
Clacu02g2304 1039 Pfam Replication factor RFC1 C terminal domain 732 894 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 80 105 - -
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 1001 1015 - -
Clacu02g2304 1039 FunFam Replication factor C subunit 1 242 345 - -
Clacu02g2304 1039 CDD AAA 444 592 - -
Clacu02g2304 1039 CDD HLD_clamp_RFC 592 650 IPR047854 -
Clacu02g2304 1039 FunFam Replication factor C subunit 1 664 773 - -
Clacu02g2304 1039 SMART AAA_5 455 593 IPR003593 GO:0016887(InterPro)
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 159 173 - -
Clacu02g2304 1039 Gene3D BRCT domain 243 345 IPR036420 -
Clacu02g2304 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 652 IPR027417 -
Clacu02g2304 1039 PIRSF RFC1 48 239 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Clacu02g2304 1039 PIRSF RFC1 226 995 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Clacu02g2304 1039 ProSiteProfiles BRCT domain profile. 266 344 IPR001357 -
Clacu02g2304 1039 SUPERFAMILY BRCT domain 266 345 IPR036420 -
Clacu02g2304 1039 FunFam Replication factor C subunit 1 592 663 - -
Clacu02g2304 1039 SMART BRCT_7 268 346 IPR001357 -
Clacu02g2304 1039 FunFam Replication factor C subunit 1 403 591 - -
Clacu02g2304 1039 CDD BRCT_RFC1 266 344 - -
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 981 1039 - -
Clacu02g2304 1039 Gene3D - 403 591 IPR027417 -
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 106 147 - -
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 981 999 - -
Clacu02g2304 1039 Pfam BRCA1 C Terminus (BRCT) domain 268 343 IPR001357 -
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 62 266 - -
Clacu02g2304 1039 Gene3D - 664 774 - -
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 940 960 - -
Clacu02g2304 1039 Gene3D - 592 662 - -
Clacu02g2304 1039 MobiDBLite consensus disorder prediction 1021 1039 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2304 K10754 - - csv:101204361 1661.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2304 Clacu-Chr2:36125460 Clacu05g0389 Clacu-Chr5:3337696 1.10E-21 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g0027 . 106 784 Core DNA Replication Machinery Family AT4G14700 67.0 1.2e-265 912.9
Clacu08g0027 . 106 784 Core DNA Replication Machinery Family AT4G12620 69.3 6.3e-275 943.7
Clacu08g1734 . 55 408 Core DNA Replication Machinery Family AT2G37560 65.0 3.4e-137 485.0
Clacu07g0481 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.5e-152 535.0
Clacu06g0361 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 9.1e-172 600.5
Clacu11g0941 . 1 283 Core DNA Replication Machinery Family AT1G26840 65.7 1.9e-93 339.3
Clacu09g2284 . 68 861 Core DNA Replication Machinery Family AT1G79150 59.4 4.8e-246 847.8
Clacu10g1298 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1354.0
Clacu01g2525 . 120 694 Core DNA Replication Machinery Family AT5G46280 80.9 1.4e-268 922.2
Clacu02g0508 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Clacu11g0494 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Clacu01g2678 . 7 801 Core DNA Replication Machinery Family AT5G44635 73.3 0.0e+00 1152.9
Clacu09g0515 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Clacu02g2016 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.3e-163 571.2
Clacu02g2016 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.5e-143 505.8
Clacu09g0874 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.1e-257 885.9
Clacu10g2027 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1081.2
Clacu09g1643 . 9 629 Core DNA Replication Machinery Family AT2G14050 78.9 2.4e-285 978.0
Clacu02g1224 . 1908 2318 Core DNA Replication Machinery Family AT2G20980 56.4 1.1e-118 423.7
Clacu09g0268 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Clacu11g0765 . 635 793 Core DNA Replication Machinery Family AT1G19080 69.8 2.1e-61 232.3
Clacu11g0765 . 635 793 Core DNA Replication Machinery Family AT3G55490 69.8 2.1e-61 232.3
Clacu05g0167 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.5e-49 193.0
Clacu02g1274 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1750.3
Clacu04g1224 . 151 773 Core DNA Replication Machinery Family AT1G67630 60.7 4.3e-215 744.6
Clacu06g0210 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.5 5.8e-183 637.5
Clacu08g0161 . 48 491 Core DNA Replication Machinery Family AT5G41880 65.0 1.3e-176 616.3
Clacu01g1579 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.3
Clacu10g1736 . 1 419 Core DNA Replication Machinery Family AT2G42120 75.9 3.2e-196 681.4
Clacu06g0210 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.5 5.8e-183 637.5
Clacu01g0553 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.2e-37 151.4
Clacu02g2254 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Clacu09g2081 . 7 2057 Core DNA Replication Machinery Family AT1G08260 68.7 0.0e+00 2819.3
Clacu02g2254 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Clacu09g2081 . 29 2148 Core DNA Replication Machinery Family AT2G27120 65.8 0.0e+00 2773.0
Clacu04g1335 . 638 1059 Core DNA Replication Machinery Family AT5G22110 67.0 8.2e-169 590.5
Clacu02g2304 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-304 1042.7
Clacu10g0345 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 3.7e-173 604.4
Clacu04g0492 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Clacu11g1775 . 66 384 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Clacu08g0732 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 2.5e-154 542.0
Clacu11g0299 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.9 6.7e-245 843.6
Clacu10g0107 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 9.8e-196 680.2
Clacu06g1663 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 9.8e-249 856.3
Clacu10g0107 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.2 8.7e-227 783.9
Clacu06g1663 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 7.8e-241 830.1
Clacu10g0107 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 2.2e-224 775.8
Clacu03g1825 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.5 1.0e-188 656.4
Clacu05g0312 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.3 8.9e-298 1020.0
Clacu07g1578 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.3e-115 412.9
Clacu02g2212 . 2 740 Core DNA Replication Machinery Family AT1G08130 69.4 8.2e-288 986.5
Clacu02g2212 . 162 740 Core DNA Replication Machinery Family AT1G49250 69.3 2.8e-233 805.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009501 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33