Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g2304 | ATGTCGATTCGAACTTCTCCACATTTCCGAAAGCGAGCGGTGGAAATTTCTCGCGAGCCCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTGCATTCTACAATGGTGAGTTAGGGTTTTCGGCGGATATTAGAAAATGGTTCATGAAAGCACACGATAAAGAGAACGGCAGTGGATCAAAGAAAGCAAAACCCGCTCCAAGCAACTTAGAGAAATCCGCTTCAGCTGAACTACAGTCCGGGAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCATAAGGACAAGGATACAAAAGAAACAGAGGAACCCCCGATCAAACAAAAGTCTCCACAGGATCCTAAGGAATCTCCAGCCAAAAGAAAGTTTCAAATGGATAATGAGGGATCACCAAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGTTGATAATGACGATGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTTTAGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACTGTTTCTTCTCTGAAGCCTAGTGGAAGAGGTAGGGGAGGAAGGGGTTCATCTGCTGCAACCGGTGGTGGTAGAGGCAGAGGTGGTGGGCGAGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCAGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACTGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTGCATCAGGCCAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCTGTGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGCCCCGCAAGGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGCTGAATTCTCTAACCTAACATGGACCGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAAAACTTCATAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCCGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAACGCCAGCGACAATCGAGGTAAATCAGATGCCAAGGTTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTGCACTTCAGAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCGGGAGATAGGGGTGGAGTTGCCGATCTGATTGCAAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAGTATGATGATATTCGCCAACGGCTTCTGGGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGACGAAAGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTACAGGCCAAGCGCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGAATTGATTGCCCGTACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACGTTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCACGTTCACATTCTTGCTTCTCGCGAATCCTGCTCAGGGAGGGAACACCTAAGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGGGCCACTACACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGTGTAACCCCCGCAGTCAAAGCTGCTCTGACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCTGCAGATCTTATTACGCTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCAACTGAGGATGCAGTTGAAGGTGCTGTTGGAGACACATTGGCAGAAAGTGACGACGAAAACTCTTTGGACAATGAGGATGCAGAAGACTCCACAAACGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAAATTCAAGTGCGACGAAATCTGGTGGCAGAGGACGAGGAGGTAGAAGTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGAAATGAGACCAAGTCTTCGCCATGGAGCGGTTGACATTTGGGATGATGATTCACCCAACGGACGAGACTGGTTTTTGTAG | 3120 | 43.21 | MSIRTSPHFRKRAVEISREPSRTVNLTVEWRFLPFALRLAFYNGELGFSADIRKWFMKAHDKENGSGSKKAKPAPSNLEKSASAELQSGKTGPSGGESTGRRITSKYFASEKHKDKDTKETEEPPIKQKSPQDPKESPAKRKFQMDNEGSPKASPLKKSNKIVDNDDDAVFSSSRKNMSEVTPNKKLKSGSGKGITQKPLEIEASDDEETKGTVSSLKPSGRGRGGRGSSAATGGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGQKAPPRQDPKKSVVKSSVESPTEKNFQKVQAKPRKDLTASASPAKQKSRTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFIDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKVQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMELIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTGPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVTPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDAVEGAVGDTLAESDDENSLDNEDAEDSTNGEKLQLELQSLNKKGMQVQLDLKGVENSSATKSGGRGRGGRSSQASEKKGGRGSEMRPSLRHGAVDIWDDDSPNGRDWFL | 1039 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 36125460 | 36138502 | + | ClG42_02g0230400.10 | Clacu02g2304 | 244372 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g2304 | 1039 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 114 | 957 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER) | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 347 | 399 | - | - | |
| Clacu02g2304 | 1039 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 663 | 808 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 250 | 265 | - | - | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 940 | 954 | - | - | |
| Clacu02g2304 | 1039 | Pfam | ATPase family associated with various cellular activities (AAA) | 459 | 571 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 174 | 191 | - | - | |
| Clacu02g2304 | 1039 | Pfam | Replication factor RFC1 C terminal domain | 732 | 894 | IPR013725 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro) | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 80 | 105 | - | - | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 1001 | 1015 | - | - | |
| Clacu02g2304 | 1039 | FunFam | Replication factor C subunit 1 | 242 | 345 | - | - | |
| Clacu02g2304 | 1039 | CDD | AAA | 444 | 592 | - | - | |
| Clacu02g2304 | 1039 | CDD | HLD_clamp_RFC | 592 | 650 | IPR047854 | - | |
| Clacu02g2304 | 1039 | FunFam | Replication factor C subunit 1 | 664 | 773 | - | - | |
| Clacu02g2304 | 1039 | SMART | AAA_5 | 455 | 593 | IPR003593 | GO:0016887(InterPro) | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 159 | 173 | - | - | |
| Clacu02g2304 | 1039 | Gene3D | BRCT domain | 243 | 345 | IPR036420 | - | |
| Clacu02g2304 | 1039 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 403 | 652 | IPR027417 | - | |
| Clacu02g2304 | 1039 | PIRSF | RFC1 | 48 | 239 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) | |
| Clacu02g2304 | 1039 | PIRSF | RFC1 | 226 | 995 | IPR012178 | GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro) | |
| Clacu02g2304 | 1039 | ProSiteProfiles | BRCT domain profile. | 266 | 344 | IPR001357 | - | |
| Clacu02g2304 | 1039 | SUPERFAMILY | BRCT domain | 266 | 345 | IPR036420 | - | |
| Clacu02g2304 | 1039 | FunFam | Replication factor C subunit 1 | 592 | 663 | - | - | |
| Clacu02g2304 | 1039 | SMART | BRCT_7 | 268 | 346 | IPR001357 | - | |
| Clacu02g2304 | 1039 | FunFam | Replication factor C subunit 1 | 403 | 591 | - | - | |
| Clacu02g2304 | 1039 | CDD | BRCT_RFC1 | 266 | 344 | - | - | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 981 | 1039 | - | - | |
| Clacu02g2304 | 1039 | Gene3D | - | 403 | 591 | IPR027417 | - | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 106 | 147 | - | - | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 981 | 999 | - | - | |
| Clacu02g2304 | 1039 | Pfam | BRCA1 C Terminus (BRCT) domain | 268 | 343 | IPR001357 | - | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 62 | 266 | - | - | |
| Clacu02g2304 | 1039 | Gene3D | - | 664 | 774 | - | - | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 940 | 960 | - | - | |
| Clacu02g2304 | 1039 | Gene3D | - | 592 | 662 | - | - | |
| Clacu02g2304 | 1039 | MobiDBLite | consensus disorder prediction | 1021 | 1039 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g2304 | Clacu-Chr2:36125460 | Clacu05g0389 | Clacu-Chr5:3337696 | 1.10E-21 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g2304 | K10754 | - | csv:101204361 | 1661.35 |