Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2308 ATGATGGAAGGTATGGTTCTCAAGCTTCCATCCTTCCATTCCCAATTCCAATTCATAAACCCTAGTCGTTGCATTTCCTCTTTCTCCTCCACTCTTCCTACTTCCTCTTCTCCTTTTCTCCGATTCCGCAACCGCCGATTTTCTTCTCCCTTCTCAGTATCTGCTTCTGCTTCCACCTCCAGGGAAACCGACAGCTTGCATCTTAACTTTCTTTCGCTTGGCCACACAACCCGTCCTGATTTCCCCATCCTCCATCAGGAAGTAAATGGCTCCAAGCTTGTCTACTTGGACAACGCTGCCACCTCTCAGAAACCTATTGCTGTGTTGAAAGCTTTGCAGAATTATTATGAGTCTTACAATTCAAATGTTCATCGTGGCATACACTCCTTGAGTGCGAAAGCAACTGACGAGTATGAGCGGGCAAGAAAGAAAGTTGCGTCTTTTATCAATGCTGGAGAAGCTAAAGAGATTGTTTTTACCAGGAATGCAACTGAAGCTATCAATTTAGTGGCTTATTCTTGGGGCCTAGCAAATTTAAAATCAGGAGATGAGATCATACTTACGGTTGCTGAACATCATAGTGCCATTGTACCTTGGCAACTTGTAGCTGAAAGGACTGGTGCTATTCTGAAGTTTGTGAGTTTAGGTGAACATGATGTTCCAAACTTAAAAGACTTAAAGGAGATGTTTTCAACAAAAACGAAGCTTGTGGTTACCCATCATGTATCAAATGTACTAGCATCTGTTCTTCCAATAGAAGAAATAGTTGGCTTGGCACATCGTTTTGGGGCAAAGGTGCTAGTAGATGCATGCCAGAGTGTTCCACATATGGTTGTTGACGTCCAGGTGCTTGATGCTGACTTTCTTGTTGCTTCTTCTCACAAGATGTGTGGGCCTACAGGCATCGGATTTTTGTATGGAAAGATTGATCTGCTGTCTGCAATGCCTCCATTCTTAGGTGGTGGAGAGATGATCTCAGATGTATTTCTTGACCATTCCACATTTGCACAACCTCCTTCCAGATTTGAGGCTGGGACACCAGCAATTGGAGAAGCAATTGGATTGGGAGCTGCTATTGATTATTTGTCCGGAATTGGAATGCAAAAGATTCATAGTTATGAAGAAGAATTGGCGAATTATCTATATGAAAACCTTCGTGCAGTCCCTAACATTCGGATATATGGCCCAGCTCCCACTGCACATGTTCAACGTGCTGCTCTGTGTTCTTTCAACATTGGAGACACTCATCCAACCGACATAGCAACCTTTCTCGATCAACAGCATGGTGTAGCCATTAGATCGGGACATCACTGTGCGCAGCCCCTCCATCGGGCTCTTGGTGTCAGCTCAAGCGCACGAGTTAGCCTTTACTTCTACAACACAAAAGAGGATGTGGACTACTTTATCCAGGCTCTAAACGACACGCTCGAACTGAAACTTCTAGACTGCAAGGACTATGCTCTATTTCTTGCTTTGAAGAAGATTGTCATTCTTATTATTATCTTGAGCATCCTCCTGTGTCATTTACTACAAGATCATTGCCCATGGAAGCTTCTACTTGAATCATCCATGGATTTTGATCGAACTCAAATCGAAAACGAAAGGAGAAACTTACATGGAGAAAGATTTGGCCAAAACGCAGCTCCTCAATCAAGAATCGCAAGAGTAATATCTCGATCATTGTTCTTCGCTGTGATTCTCCTCTTAATTCCTCACATTGGTCCCATATTCAACGACCAAGGAAAATTCCTCTCCTTCGATTCCACAAACCCTAACTCCATAACAAAACAAGAATTCTATGACTTAATCGACGAATTGAAAACCGCCGAAATTCTCACAAAGGAGAAAAAGAGCCTTGTGTTGATTCCAGGATCGAATTCAATCAACGAAGCCCCGAATGACTATGCAGATTACCTGAGAAGTATGGGAGCCGATGTAGTAATAGAGAACAATTTTTTGTTTGGAGGCTCCTTTAAGAACGAATCGTTTGATATTGTGTTCACGCTAGGGCAACTCGGAGCCGGATTTGTTGACCGTGTTCTTAAAAGCGGCGGCGCAGTGGTTGTTCCGGCGAAGGATATGTCTCTAAATGTGTATCTTGATGAGTTGAATTATACGTGCGTTTATTTAAAGCCATACAGTCTTGAATCGATCATCATGGTGGTGGTGAAACCAACGCCGTCTGATCAATCAGATGCCGGAGTTTTCGGCAGTAAGGAAGAACTAATGGCGGCTCGGGCTGTTGTTCCTCAGCGACAACTTAGAATCAGAGATGAAGGTAAGCCGAAGGTCGTAGCGGTGGAAGGAAGAACAAGACGAATTCTTAAGGATATAGGAAATCTAGTGCCTGATCGAGCCATAGAAGGGAAACCCGGAACTCAACCAGCAGAGAAGAATAAGAAGGCAATCACCCAAAAGGTGGATGGAGGAGTTGGGAAGGAGGGAGTCAATGCAACGAAGGCTGGAGTAACTGAGAAACCGAAACTGAAGACTGTAATCCGCTCCAGCGACGAGAGATATATAAGCAACGTCAAAGATACTAAATCAAAGGACAAGAATAAGAGATCTCTGAGTTCAACCCTTAGTGCCAGAAGCAAGGCTGCTTGTGGACTCACCAACAAACCACTGGATTCTTCAGTAGCTAATATTGATGAAGCAGATGCCAACAATGAATTAGCCGTAGTAGAATACATTGATGACATGTATAAGTTTTACAAGCTTGCAGAAGATGAGAGTAGAGTATCAGATTACATGGGAGCACAGCCAGATTTGAATGCTAAGATGAGATCCATTCTCATAGATTGGTTGATAGAAGTTCATCGAAAGTTTGAACTGATGCCGGAAACCCTTTACCTCACTGTAAACATCGTCGACCGATTCCTTTCCTTAAAGACTGTACCCAGAAAGGAACTTCAATTGCTTGGTATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTTGTAAGTATATCTGCAAATACTTATCAAAGAGAACAAATTTTGGTGATGGAGAAAGTAATCTTGGGTAGGTTGGAATGGCTTTTAACAGTTCCTACCCCTTATGTTTTTCTTGTTCGGTATGTCAAGGCTTCTGAGCCATCTGATGATGAGATGGAGAATATGGTATTTTTTCTAGCTGAGCTTGGTCTGATGAACTATCCAATAGCAATATCATACAGCCCTTCAATGATTGCTTCAGCGGCTGTTTATGCTGCAAGATGCACACTTGAAAAGAGCCCAATCTGGACAGCAACTTTGCATCACCATACAGGCTATGTTGAAGAAGAGTTGAAGGAATGTGCAAAACTCCTTCTGAACTTACACCGTGGAGCTGTAGATTCAAAACTCAAGGCTGTATACAGAAAATATTCAAGTCCCGATCGCCGTGCCGTTTCTCTTCTTCCTCCAGCTAAAAGCTTAACTCCAGATTGTAGTCCAGAAGTATGA 3474 42.98 MMEGMVLKLPSFHSQFQFINPSRCISSFSSTLPTSSSPFLRFRNRRFSSPFSVSASASTSRETDSLHLNFLSLGHTTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYESYNSNVHRGIHSLSAKATDEYERARKKVASFINAGEAKEIVFTRNATEAINLVAYSWGLANLKSGDEIILTVAEHHSAIVPWQLVAERTGAILKFVSLGEHDVPNLKDLKEMFSTKTKLVVTHHVSNVLASVLPIEEIVGLAHRFGAKVLVDACQSVPHMVVDVQVLDADFLVASSHKMCGPTGIGFLYGKIDLLSAMPPFLGGGEMISDVFLDHSTFAQPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQKIHSYEEELANYLYENLRAVPNIRIYGPAPTAHVQRAALCSFNIGDTHPTDIATFLDQQHGVAIRSGHHCAQPLHRALGVSSSARVSLYFYNTKEDVDYFIQALNDTLELKLLDCKDYALFLALKKIVILIIILSILLCHLLQDHCPWKLLLESSMDFDRTQIENERRNLHGERFGQNAAPQSRIARVISRSLFFAVILLLIPHIGPIFNDQGKFLSFDSTNPNSITKQEFYDLIDELKTAEILTKEKKSLVLIPGSNSINEAPNDYADYLRSMGADVVIENNFLFGGSFKNESFDIVFTLGQLGAGFVDRVLKSGGAVVVPAKDMSLNVYLDELNYTCVYLKPYSLESIIMVVVKPTPSDQSDAGVFGSKEELMAARAVVPQRQLRIRDEGKPKVVAVEGRTRRILKDIGNLVPDRAIEGKPGTQPAEKNKKAITQKVDGGVGKEGVNATKAGVTEKPKLKTVIRSSDERYISNVKDTKSKDKNKRSLSSTLSARSKAACGLTNKPLDSSVANIDEADANNELAVVEYIDDMYKFYKLAEDESRVSDYMGAQPDLNAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRKELQLLGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDDEMENMVFFLAELGLMNYPIAISYSPSMIASAAVYAARCTLEKSPIWTATLHHHTGYVEEELKECAKLLLNLHRGAVDSKLKAVYRKYSSPDRRAVSLLPPAKSLTPDCSPEV 1157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36185997 36196258 + ClG42_02g0230800.10 Clacu02g2308 244376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2308 1157 CDD SufS_like 94 472 IPR010970 GO:0006534(InterPro)|GO:0030170(InterPro)|GO:0031071(InterPro)
Clacu02g2308 1157 SMART Cyclin_C_2 1027 1146 IPR004367 -
Clacu02g2308 1157 CDD CYCLIN_AtCycB-like_rpt2 1027 1145 - -
Clacu02g2308 1157 SUPERFAMILY Cyclin-like 1028 1149 IPR036915 -
Clacu02g2308 1157 SMART cyclin_7 1031 1115 IPR013763 -
Clacu02g2308 1157 SMART cyclin_7 934 1018 IPR013763 -
Clacu02g2308 1157 SUPERFAMILY Cyclin-like 889 1022 IPR036915 -
Clacu02g2308 1157 Gene3D - 900 1142 - -
Clacu02g2308 1157 CDD CYCLIN_AtCycB-like_rpt1 878 1022 - -
Clacu02g2308 1157 ProSitePatterns Cyclins signature. 929 960 IPR048258 -
Clacu02g2308 1157 Gene3D Aspartate Aminotransferase, domain 1 78 472 IPR015422 -
Clacu02g2308 1157 Gene3D - 914 1025 - -
Clacu02g2308 1157 Pfam Cyclin, N-terminal domain 900 1024 IPR006671 -
Clacu02g2308 1157 Pfam Cyclin, C-terminal domain 1027 1145 IPR004367 -
Clacu02g2308 1157 Pfam Aminotransferase class-V 94 468 IPR000192 -
Clacu02g2308 1157 Gene3D - 105 365 IPR015421 -
Clacu02g2308 1157 FunFam G2/mitotic-specific cyclin-1 1022 1141 - -
Clacu02g2308 1157 NCBIfam SufS family cysteine desulfurase 77 476 IPR010970 GO:0006534(InterPro)|GO:0030170(InterPro)|GO:0031071(InterPro)
Clacu02g2308 1157 FunFam G2/mitotic-specific cyclin 913 1021 - -
Clacu02g2308 1157 SUPERFAMILY PLP-dependent transferases 77 476 IPR015424 -
Clacu02g2308 1157 PANTHER CYSTEINE DESULFURASE 58 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2308 Clacu-Chr2:36185997 Clacu04g0627 Clacu-Chr4:19855548 8.20E-111 dispersed
Clacu02g2308 Clacu-Chr2:36185997 Clacu05g1869 Clacu-Chr5:27892746 1.60E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2308 K11717 - csv:101222630 851.662