Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g2308 | ATGATGGAAGGTATGGTTCTCAAGCTTCCATCCTTCCATTCCCAATTCCAATTCATAAACCCTAGTCGTTGCATTTCCTCTTTCTCCTCCACTCTTCCTACTTCCTCTTCTCCTTTTCTCCGATTCCGCAACCGCCGATTTTCTTCTCCCTTCTCAGTATCTGCTTCTGCTTCCACCTCCAGGGAAACCGACAGCTTGCATCTTAACTTTCTTTCGCTTGGCCACACAACCCGTCCTGATTTCCCCATCCTCCATCAGGAAGTAAATGGCTCCAAGCTTGTCTACTTGGACAACGCTGCCACCTCTCAGAAACCTATTGCTGTGTTGAAAGCTTTGCAGAATTATTATGAGTCTTACAATTCAAATGTTCATCGTGGCATACACTCCTTGAGTGCGAAAGCAACTGACGAGTATGAGCGGGCAAGAAAGAAAGTTGCGTCTTTTATCAATGCTGGAGAAGCTAAAGAGATTGTTTTTACCAGGAATGCAACTGAAGCTATCAATTTAGTGGCTTATTCTTGGGGCCTAGCAAATTTAAAATCAGGAGATGAGATCATACTTACGGTTGCTGAACATCATAGTGCCATTGTACCTTGGCAACTTGTAGCTGAAAGGACTGGTGCTATTCTGAAGTTTGTGAGTTTAGGTGAACATGATGTTCCAAACTTAAAAGACTTAAAGGAGATGTTTTCAACAAAAACGAAGCTTGTGGTTACCCATCATGTATCAAATGTACTAGCATCTGTTCTTCCAATAGAAGAAATAGTTGGCTTGGCACATCGTTTTGGGGCAAAGGTGCTAGTAGATGCATGCCAGAGTGTTCCACATATGGTTGTTGACGTCCAGGTGCTTGATGCTGACTTTCTTGTTGCTTCTTCTCACAAGATGTGTGGGCCTACAGGCATCGGATTTTTGTATGGAAAGATTGATCTGCTGTCTGCAATGCCTCCATTCTTAGGTGGTGGAGAGATGATCTCAGATGTATTTCTTGACCATTCCACATTTGCACAACCTCCTTCCAGATTTGAGGCTGGGACACCAGCAATTGGAGAAGCAATTGGATTGGGAGCTGCTATTGATTATTTGTCCGGAATTGGAATGCAAAAGATTCATAGTTATGAAGAAGAATTGGCGAATTATCTATATGAAAACCTTCGTGCAGTCCCTAACATTCGGATATATGGCCCAGCTCCCACTGCACATGTTCAACGTGCTGCTCTGTGTTCTTTCAACATTGGAGACACTCATCCAACCGACATAGCAACCTTTCTCGATCAACAGCATGGTGTAGCCATTAGATCGGGACATCACTGTGCGCAGCCCCTCCATCGGGCTCTTGGTGTCAGCTCAAGCGCACGAGTTAGCCTTTACTTCTACAACACAAAAGAGGATGTGGACTACTTTATCCAGGCTCTAAACGACACGCTCGAACTGAAACTTCTAGACTGCAAGGACTATGCTCTATTTCTTGCTTTGAAGAAGATTGTCATTCTTATTATTATCTTGAGCATCCTCCTGTGTCATTTACTACAAGATCATTGCCCATGGAAGCTTCTACTTGAATCATCCATGGATTTTGATCGAACTCAAATCGAAAACGAAAGGAGAAACTTACATGGAGAAAGATTTGGCCAAAACGCAGCTCCTCAATCAAGAATCGCAAGAGTAATATCTCGATCATTGTTCTTCGCTGTGATTCTCCTCTTAATTCCTCACATTGGTCCCATATTCAACGACCAAGGAAAATTCCTCTCCTTCGATTCCACAAACCCTAACTCCATAACAAAACAAGAATTCTATGACTTAATCGACGAATTGAAAACCGCCGAAATTCTCACAAAGGAGAAAAAGAGCCTTGTGTTGATTCCAGGATCGAATTCAATCAACGAAGCCCCGAATGACTATGCAGATTACCTGAGAAGTATGGGAGCCGATGTAGTAATAGAGAACAATTTTTTGTTTGGAGGCTCCTTTAAGAACGAATCGTTTGATATTGTGTTCACGCTAGGGCAACTCGGAGCCGGATTTGTTGACCGTGTTCTTAAAAGCGGCGGCGCAGTGGTTGTTCCGGCGAAGGATATGTCTCTAAATGTGTATCTTGATGAGTTGAATTATACGTGCGTTTATTTAAAGCCATACAGTCTTGAATCGATCATCATGGTGGTGGTGAAACCAACGCCGTCTGATCAATCAGATGCCGGAGTTTTCGGCAGTAAGGAAGAACTAATGGCGGCTCGGGCTGTTGTTCCTCAGCGACAACTTAGAATCAGAGATGAAGGTAAGCCGAAGGTCGTAGCGGTGGAAGGAAGAACAAGACGAATTCTTAAGGATATAGGAAATCTAGTGCCTGATCGAGCCATAGAAGGGAAACCCGGAACTCAACCAGCAGAGAAGAATAAGAAGGCAATCACCCAAAAGGTGGATGGAGGAGTTGGGAAGGAGGGAGTCAATGCAACGAAGGCTGGAGTAACTGAGAAACCGAAACTGAAGACTGTAATCCGCTCCAGCGACGAGAGATATATAAGCAACGTCAAAGATACTAAATCAAAGGACAAGAATAAGAGATCTCTGAGTTCAACCCTTAGTGCCAGAAGCAAGGCTGCTTGTGGACTCACCAACAAACCACTGGATTCTTCAGTAGCTAATATTGATGAAGCAGATGCCAACAATGAATTAGCCGTAGTAGAATACATTGATGACATGTATAAGTTTTACAAGCTTGCAGAAGATGAGAGTAGAGTATCAGATTACATGGGAGCACAGCCAGATTTGAATGCTAAGATGAGATCCATTCTCATAGATTGGTTGATAGAAGTTCATCGAAAGTTTGAACTGATGCCGGAAACCCTTTACCTCACTGTAAACATCGTCGACCGATTCCTTTCCTTAAAGACTGTACCCAGAAAGGAACTTCAATTGCTTGGTATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTTGTAAGTATATCTGCAAATACTTATCAAAGAGAACAAATTTTGGTGATGGAGAAAGTAATCTTGGGTAGGTTGGAATGGCTTTTAACAGTTCCTACCCCTTATGTTTTTCTTGTTCGGTATGTCAAGGCTTCTGAGCCATCTGATGATGAGATGGAGAATATGGTATTTTTTCTAGCTGAGCTTGGTCTGATGAACTATCCAATAGCAATATCATACAGCCCTTCAATGATTGCTTCAGCGGCTGTTTATGCTGCAAGATGCACACTTGAAAAGAGCCCAATCTGGACAGCAACTTTGCATCACCATACAGGCTATGTTGAAGAAGAGTTGAAGGAATGTGCAAAACTCCTTCTGAACTTACACCGTGGAGCTGTAGATTCAAAACTCAAGGCTGTATACAGAAAATATTCAAGTCCCGATCGCCGTGCCGTTTCTCTTCTTCCTCCAGCTAAAAGCTTAACTCCAGATTGTAGTCCAGAAGTATGA | 3474 | 42.98 | MMEGMVLKLPSFHSQFQFINPSRCISSFSSTLPTSSSPFLRFRNRRFSSPFSVSASASTSRETDSLHLNFLSLGHTTRPDFPILHQEVNGSKLVYLDNAATSQKPIAVLKALQNYYESYNSNVHRGIHSLSAKATDEYERARKKVASFINAGEAKEIVFTRNATEAINLVAYSWGLANLKSGDEIILTVAEHHSAIVPWQLVAERTGAILKFVSLGEHDVPNLKDLKEMFSTKTKLVVTHHVSNVLASVLPIEEIVGLAHRFGAKVLVDACQSVPHMVVDVQVLDADFLVASSHKMCGPTGIGFLYGKIDLLSAMPPFLGGGEMISDVFLDHSTFAQPPSRFEAGTPAIGEAIGLGAAIDYLSGIGMQKIHSYEEELANYLYENLRAVPNIRIYGPAPTAHVQRAALCSFNIGDTHPTDIATFLDQQHGVAIRSGHHCAQPLHRALGVSSSARVSLYFYNTKEDVDYFIQALNDTLELKLLDCKDYALFLALKKIVILIIILSILLCHLLQDHCPWKLLLESSMDFDRTQIENERRNLHGERFGQNAAPQSRIARVISRSLFFAVILLLIPHIGPIFNDQGKFLSFDSTNPNSITKQEFYDLIDELKTAEILTKEKKSLVLIPGSNSINEAPNDYADYLRSMGADVVIENNFLFGGSFKNESFDIVFTLGQLGAGFVDRVLKSGGAVVVPAKDMSLNVYLDELNYTCVYLKPYSLESIIMVVVKPTPSDQSDAGVFGSKEELMAARAVVPQRQLRIRDEGKPKVVAVEGRTRRILKDIGNLVPDRAIEGKPGTQPAEKNKKAITQKVDGGVGKEGVNATKAGVTEKPKLKTVIRSSDERYISNVKDTKSKDKNKRSLSSTLSARSKAACGLTNKPLDSSVANIDEADANNELAVVEYIDDMYKFYKLAEDESRVSDYMGAQPDLNAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRKELQLLGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDDEMENMVFFLAELGLMNYPIAISYSPSMIASAAVYAARCTLEKSPIWTATLHHHTGYVEEELKECAKLLLNLHRGAVDSKLKAVYRKYSSPDRRAVSLLPPAKSLTPDCSPEV | 1157 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 36185997 | 36196258 | + | ClG42_02g0230800.10 | Clacu02g2308 | 244376 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g2308 | 1157 | CDD | SufS_like | 94 | 472 | IPR010970 | GO:0006534(InterPro)|GO:0030170(InterPro)|GO:0031071(InterPro) | |
Clacu02g2308 | 1157 | SMART | Cyclin_C_2 | 1027 | 1146 | IPR004367 | - | |
Clacu02g2308 | 1157 | CDD | CYCLIN_AtCycB-like_rpt2 | 1027 | 1145 | - | - | |
Clacu02g2308 | 1157 | SUPERFAMILY | Cyclin-like | 1028 | 1149 | IPR036915 | - | |
Clacu02g2308 | 1157 | SMART | cyclin_7 | 1031 | 1115 | IPR013763 | - | |
Clacu02g2308 | 1157 | SMART | cyclin_7 | 934 | 1018 | IPR013763 | - | |
Clacu02g2308 | 1157 | SUPERFAMILY | Cyclin-like | 889 | 1022 | IPR036915 | - | |
Clacu02g2308 | 1157 | Gene3D | - | 900 | 1142 | - | - | |
Clacu02g2308 | 1157 | CDD | CYCLIN_AtCycB-like_rpt1 | 878 | 1022 | - | - | |
Clacu02g2308 | 1157 | ProSitePatterns | Cyclins signature. | 929 | 960 | IPR048258 | - | |
Clacu02g2308 | 1157 | Gene3D | Aspartate Aminotransferase, domain 1 | 78 | 472 | IPR015422 | - | |
Clacu02g2308 | 1157 | Gene3D | - | 914 | 1025 | - | - | |
Clacu02g2308 | 1157 | Pfam | Cyclin, N-terminal domain | 900 | 1024 | IPR006671 | - | |
Clacu02g2308 | 1157 | Pfam | Cyclin, C-terminal domain | 1027 | 1145 | IPR004367 | - | |
Clacu02g2308 | 1157 | Pfam | Aminotransferase class-V | 94 | 468 | IPR000192 | - | |
Clacu02g2308 | 1157 | Gene3D | - | 105 | 365 | IPR015421 | - | |
Clacu02g2308 | 1157 | FunFam | G2/mitotic-specific cyclin-1 | 1022 | 1141 | - | - | |
Clacu02g2308 | 1157 | NCBIfam | SufS family cysteine desulfurase | 77 | 476 | IPR010970 | GO:0006534(InterPro)|GO:0030170(InterPro)|GO:0031071(InterPro) | |
Clacu02g2308 | 1157 | FunFam | G2/mitotic-specific cyclin | 913 | 1021 | - | - | |
Clacu02g2308 | 1157 | SUPERFAMILY | PLP-dependent transferases | 77 | 476 | IPR015424 | - | |
Clacu02g2308 | 1157 | PANTHER | CYSTEINE DESULFURASE | 58 | 477 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g2308 | Clacu-Chr2:36185997 | Clacu04g0627 | Clacu-Chr4:19855548 | 8.20E-111 | dispersed | |
Clacu02g2308 | Clacu-Chr2:36185997 | Clacu05g1869 | Clacu-Chr5:27892746 | 1.60E-45 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g2308 | K11717 | - | csv:101222630 | 851.662 |