Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2309 ATGAAATATTGCATTGATGCCGTCGGACTTACAAGATTGGTAATTTTCCTAGCAGCTTTTTCAACCATCTTTGGCGCATCGCCGCCGGTTCCGACCGAAAAGTCGAAATTAGACAGCTGGTTTTCAGAAAATGTGAAGCCCTTCGCTGATCGTAAGGCGGAGCTTGATCCGGCGCTTGTGACTGCAGAAGAAAACGCCACCGTGGTTAAAGTAAGGACCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGCTCTCCTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTTGAGTCTGATTATTTCACCGCCGCCAATCTCATCATTGAGAATTCATCTCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTATTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTATGGATTTCAAGATACCCTTTGCGATGACGACGGTTTGCATCTCTACAAAGATTGCTTCATCCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACAGCCCATTCAAGGGAACAAGAATCAGATGGAAGTGGATATTCGTTCGTTCATTGTAGCATTACGGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGATCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAACGATATGAACCATGCCGGTTACGATGCCACGGTTTTGTTCGGAGAATATAAGTGTTCGGGACCGGGATCGGAGCCGAGCGGGCGCGTAAAATACAGCAAGCAATTGAGTGATGTAGAAGTGAAACCGTTCATTAGTCTTGGTTACGTGCAGAGCGAGAAGTGGCTGCTTCCTCCTCCCAATCCTCAAGCTTAA 1107 45.8 MKYCIDAVGLTRLVIFLAAFSTIFGASPPVPTEKSKLDSWFSENVKPFADRKAELDPALVTAEENATVVKVRTDGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFVTLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESDYFTAANLIIENSSPRPDGKRKGAQALAARLLGTKAAVYNCKFYGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDVEVKPFISLGYVQSEKWLLPPPNPQA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36199359 36201123 - ClG42_02g0230900.10 Clacu02g2309 244377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2309 368 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Clacu02g2309 368 Pfam Pectinesterase 69 354 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu02g2309 368 Gene3D - 62 363 IPR012334 -
Clacu02g2309 368 SUPERFAMILY Pectin lyase-like 66 361 IPR011050 -
Clacu02g2309 368 FunFam Pectinesterase 64 362 - -
Clacu02g2309 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 53 360 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2309 Clacu-Chr2:36199359 Clacu02g2313 Clacu-Chr2:36213322 1.00E-200 dispersed
Clacu02g2309 Clacu-Chr2:36199359 Clacu02g2312 Clacu-Chr2:36208582 6.00E-217 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2309 K01051 - csv:101205095 618.616