Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2313 ATGAAATATTGCATTGATGCCATCGGACTTACAAGATTGGTAATTTTCCTAGCAGCTTTTTCAACCATCTTTGGCGCATCGCCGCCGGTTCCGACCGAAAAGTCGAAATTAGACAGCTGGTTTTTAGAAAATGTGAAGCCCTTCGCTGATCGTAAGGCGGAGCTTGATCCGGCGCTTGTGACTGCAGAAGAAAACACCACCGTGGTTAAAGTAAGGACCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGCTCTCCTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTTGAGTCTGATTATTTCACCGCCGCCAATCTCATCATTGAGAATTCATCTCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTATTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTATGGATTTCAAGATACCCTTTGCGATGACGACGGTTTGCATCTCTACAAAGATTGCTTCATCCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACAGCCCATTCAAGGGAACAAGAATCAGATGGAAGTGGATATTCGTTCGTTCATTGTAGCATTACGGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGATCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAACGATATGAACCATGCCGGTTACGATGCCACGGTTTTGTTCGGAGAATATAAGTGTTCGGGACCGGGATCGGAGCCGAGCGGGCGCGTAAAATACAGCAAGCAATTGAGTGATGTAGAAAATCGTGACTTGAGGGTATCGCGACCCTCACTTTCCGGCGAGCTGACACCTGATCCGTCGTTATCTTCTCCAGCACCGGCGATATCAGGTCGTCACAAGAGGCATTTTCTTCCTCTTTTCCTCCTCGTCTCTGTTTCTATCCTCTTCTTCTTCAGTCACTTCTACTCCTCCATTCCCCCATCCTTCCCTTCAAACCCTAACCCTGATTTCGCTCTCACCGGGAGAATCTCCGACCCGAAAACCTCTGGTTTCACTCTAATCGTGAAGGTTCTTGCTTACAATCGCCTCGATTCCGTGTCCCGCTGCCTTCGGTCCATCGCTAATGCGGATTACCTCTCTGACCGCGTCCATCTCCATGTCTACATTGATCATTTTCCTCACAATGATGCTCATATCAAGCTCAACGAGTCGCATCGGATCTTGCAATTCGTTGATCAGTTTGTTTGGAATTTTGGGGAAAAGCTAGTGCATTATCGAACGGGGAACGTGGGTTTGCAAGCGCAGTGGTTGGAGGCTTGGTGGCCGAGCTCTGACAATGAGTTTGCATTCGTTGTGGAGGATGATCTGGAGTTGTCGCCGCTTTATTATAAGTTCCTGAGGAGTTTAATTCTGAATTATTATTATAATACTTCGAATTATGCTCCCTCGATATACGGGGCTTCGCTGCAGCGACCAAGGTTTGTTCCAGGTAAACATGGTAATAAAATAAGACTGGATGAAGGAACCAGAACTTTTTTGTTCCAAATAGTTGGCACTTGGGGTCAGCTTCTCTTTCCAAGGCCTTGGAAGGAGTTTAGATTGTGGTATGATGAGCACAAGGCGATGGGCATCAAGCCAATACTTGATGGCATGGTGACGACAGGATGGTACAAGAAGCTGGGTGAAAGAATATGGACTCCTTGGTTTATTAAATTTATCCATTCTCGTGGCTATTTCAATATCTACACCAATTTCTTACATGAAAGAGCACTGAGTACTTCTCACAGGGATGCTGGTGTCAATTATGGGAAAACAGCTGGTCCTGATTCACACTTACTGGATGAAAGTTCACTCGATTTTAATTTCCTAGAGATGAAGCCTCTTACCAATCTGAAGTGGTATGATTTCTGCTTTAGAGAAGTAATTCCTCAAAGAATTGTTAAAAGCAAGAGTGAGCTTGTTTCTGTTCTTCACTCTGTTCAGAAACACAAAAACATAATCATAGTGAGTATATTTGGGGTTTCAGAGTCCACGATGAGGAATTTCCTTTGCCACTTTGAGAGGTTGAACATAAAGAACTATATTTTGTTGGGCCATGAATCTGAGTTACTCAATGATCTAACTAGAAGAGGACACCCAGTAATTTATGCAGACCATTTTCTGAAGACTGTCAAAACTTTCAAATTTACAACTTTTGAAGGCACCACCTCTTCAGAACTGGTGAAGGTAGTTCTGGCAAAGTTCTACATTAGTAAGTCATGCTTAGAACTTGGGTACAATCCTGTGTTGGTAGATGGAAACATGCTTTTTGTCAATGGTGATCCATTCACAGACTTAAGTCTTGCTGACAATGTTGTTTCCGGGCAGAGCTTTGAACTTTTCTTCATTAAAAGCTCGTCCTCTGCTCAAAAGATGTGGACTAGTCACATGGTTGTCGAGGCCGAAGCCATGGTAGAGTCTTTGATGAGTAGAGGTTCCTCATCAAGAGATGGCATTAGTTTTGTAGGCATAGCAACTAAAGTATTAGAAAAACATGGTGTTAAGTTCAAGACAGCTGAGGAGATGAGTTTTGGTGTGAATATTGGTAACAATCCTTCCAACACATCATTAGGTGATGGGAAAAGGTTGGTGTTTTGGCCAGTTGATATGGATATTAATGGCGTACAAAAACGGCTCGAGGAGTTGGGTTTTTGGATTATTGATGCTGATCTTTCTTGCAAAGCTGTTTATTGTAATGGATTGTAG 2976 43.62 MKYCIDAIGLTRLVIFLAAFSTIFGASPPVPTEKSKLDSWFLENVKPFADRKAELDPALVTAEENTTVVKVRTDGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFVTLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESDYFTAANLIIENSSPRPDGKRKGAQALAARLLGTKAAVYNCKFYGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDVENRDLRVSRPSLSGELTPDPSLSSPAPAISGRHKRHFLPLFLLVSVSILFFFSHFYSSIPPSFPSNPNPDFALTGRISDPKTSGFTLIVKVLAYNRLDSVSRCLRSIANADYLSDRVHLHVYIDHFPHNDAHIKLNESHRILQFVDQFVWNFGEKLVHYRTGNVGLQAQWLEAWWPSSDNEFAFVVEDDLELSPLYYKFLRSLILNYYYNTSNYAPSIYGASLQRPRFVPGKHGNKIRLDEGTRTFLFQIVGTWGQLLFPRPWKEFRLWYDEHKAMGIKPILDGMVTTGWYKKLGERIWTPWFIKFIHSRGYFNIYTNFLHERALSTSHRDAGVNYGKTAGPDSHLLDESSLDFNFLEMKPLTNLKWYDFCFREVIPQRIVKSKSELVSVLHSVQKHKNIIIVSIFGVSESTMRNFLCHFERLNIKNYILLGHESELLNDLTRRGHPVIYADHFLKTVKTFKFTTFEGTTSSELVKVVLAKFYISKSCLELGYNPVLVDGNMLFVNGDPFTDLSLADNVVSGQSFELFFIKSSSSAQKMWTSHMVVEAEAMVESLMSRGSSSRDGISFVGIATKVLEKHGVKFKTAEEMSFGVNIGNNPSNTSLGDGKRLVFWPVDMDINGVQKRLEELGFWIIDADLSCKAVYCNGL 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36213322 36220679 + ClG42_02g0231300.10 Clacu02g2313 244381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2313 991 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Clacu02g2313 991 Gene3D - 62 356 IPR012334 -
Clacu02g2313 991 Pfam Pectinesterase 69 338 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu02g2313 991 SUPERFAMILY Pectin lyase-like 67 345 IPR011050 -
Clacu02g2313 991 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 431 682 IPR029044 -
Clacu02g2313 991 SUPERFAMILY Nucleotide-diphospho-sugar transferases 432 685 IPR029044 -
Clacu02g2313 991 PANTHER OSJNBA0004B13.7 PROTEIN 429 985 - -
Clacu02g2313 991 FunFam Pectinesterase 64 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1405 Clacu-Chr1:25427391 Clacu02g2313 Clacu-Chr2:36213322 2.40E-26 dispersed
Clacu02g2309 Clacu-Chr2:36199359 Clacu02g2313 Clacu-Chr2:36213322 1.00E-200 dispersed
Clacu02g2313 Clacu-Chr2:36213322 Clacu03g1526 Clacu-Chr3:28834690 3.30E-100 dispersed
Clacu02g2312 Clacu-Chr2:36208582 Clacu02g2313 Clacu-Chr2:36213322 1.00E-200 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2313 - - - 0.0