Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2363 ATGGGATACGTGGCATGCGCTGCTGTCGCTACTTTAAAGATGCGGTCCCCACTTTTGCGCCAAGCGTTTCCCGGACTTTGCTCGTCAATGGGTGAAGGAACAGTAGCCGTAGCTCTTGAATTTGAGTTCCCAAAAGGGTCGTTGCTTTACTCCAATTACTGTGCTCTCTCAGGCTTTGGATTTCCAGAATTTTCCATCCAAGTGAGTTCGTCTCTCTCTGACTTGATTTTGCAAGACTCTGGAAGACCTGAAGAAATTAAAGTTGTAGAGCATTTTACTTCCAAGGAACTGATAAGCCTCATTCAAGCGAACAATGAGCAATGCTCTGCACAAGGATTGGATACAGTCAAAGCTGATGGCTTCTTCTCTGTTTATCCAACATTTGTTCTGCATGGTATGCAGTCGAAGTCTAAAAGTGTGAATCATCTAGGATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAACCATATCTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCGATGTCAAATGATGATTTAAATGAAGACGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCCTCGAGTTCTACTCTGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCGTCGCATTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATTTGAACGGCAGTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAAACTTTGATCCGTAATTTGGTTGCTAATTTCATCAAAATTTTCCAGGTGGCAGTGAGGACAGCCATATTCTGGATAAGAGTGCCAATACTGGTTGCCAAACACACTGCTCGCACAGTTATCAGCTTCTTCTCTGTGATGACATAA 1563 45.55 MGYVACAAVATLKMRSPLLRQAFPGLCSSMGEGTVAVALEFEFPKGSLLYSNYCALSGFGFPEFSIQVSSSLSDLILQDSGRPEEIKVVEHFTSKELISLIQANNEQCSAQGLDTVKADGFFSVYPTFVLHGMQSKSKSVNHLGSEPPNMQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYLNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVSENQAAQRRLAIKTLIRNLVANFIKIFQVAVRTAIFWIRVPILVAKHTARTVISFFSVMT 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36662381 36668846 - ClG42_02g0236300.10 Clacu02g2363 244431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2363 520 Gene3D - 298 360 - -
Clacu02g2363 520 MobiDBLite consensus disorder prediction 172 218 - -
Clacu02g2363 520 ProSiteProfiles NF-YA/HAP2 family profile. 298 358 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g2363 520 MobiDBLite consensus disorder prediction 173 200 - -
Clacu02g2363 520 MobiDBLite consensus disorder prediction 357 388 - -
Clacu02g2363 520 MobiDBLite consensus disorder prediction 336 352 - -
Clacu02g2363 520 ProSitePatterns NF-YA/HAP2 subunit signature. 303 323 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Clacu02g2363 520 SMART cbf3 297 358 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g2363 520 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 152 415 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu02g2363 520 PRINTS CCAAT-binding transcription factor subunit B signature 332 355 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g2363 520 PRINTS CCAAT-binding transcription factor subunit B signature 301 323 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g2363 520 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 300 355 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g2363 520 MobiDBLite consensus disorder prediction 440 460 - -
Clacu02g2363 520 MobiDBLite consensus disorder prediction 334 392 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2592 Clacu-Chr1:36199257 Clacu02g2363 Clacu-Chr2:36662381 2.60E-27 dispersed
Clacu02g2363 Clacu-Chr2:36662381 Clacu04g0058 Clacu-Chr4:1393065 2.00E-24 dispersed
Clacu02g2363 Clacu-Chr2:36662381 Clacu03g1359 Clacu-Chr3:26360752 2.30E-73 wgd
Clacu02g2363 Clacu-Chr2:36662381 Clacu09g0409 Clacu-Chr9:3617165 6.20E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47354 PF02045 CBFB_NFYA 3.50E-26 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2363 K08064 - csv:101212961 624.394