Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2378 ATGACTGATCCTTACCCCATCAACAATAATGGCTCCTTTGGCAATTTATACCCTCTTCACCATTACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATTCTTACTCTCCTTATTATGATCATCCCTTCTCTCTTTCTTACTCCAATGATAATAATAACAATAATAATACCCTAATGACCTCTCCTCATTATCCTTCTTCCTCTCCTCAAGTCCTTCTTCCCCTTCTAAGCTTAAGCCCTGCAAGAGTAGCACAAGATCATGATAATGAAAATCACTCATTTTCCAAAGACTTGATCAAGAACTTTTGCAACCCAGCTGAAGATGATGTTGACAATGATAATGATGATGATGATGATCAAAGTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTTCTTCTTCTTCTTCTAATTCTGATTTGATTTTGAGACTTTCTTCAACTGAGATCTCAGATCAAGATGATCATCATCAATTAGAAGATCAAGTTCCTAATCCTAATTATTCTTCTTCTAATTCCAATATTATTACTAGTGCTGCTACTACTACTACTGGACTTAATAAGGGTCAATATTGGATTCCAACTCCTGCTCAGATTCTTATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAGACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGCTTAGGCTGCCATGTTATTGCTGTGCAGTTGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCATTAAAAGACTTCAGAACTCTTCAAACACATTACAAAAGAAAACATGGAATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAAAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCATAAGAGATCTCTTAAAGATCATATCAAAGCCTTTGGACATGGCCATGCAGCTTATGGAATTGATCACTCTTTTGAAGAAGATGATGAGCCAGCTTCTGAGATTGAAACATGA 1095 37.99 MTDPYPINNNGSFGNLYPLHHYFSSSSSSSSSSNSYSPYYDHPFSLSYSNDNNNNNNTLMTSPHYPSSSPQVLLPLLSLSPARVAQDHDNENHSFSKDLIKNFCNPAEDDVDNDNDDDDDQSVTVALHLGLPTPSSSSSNSDLILRLSSTEISDQDDHHQLEDQVPNPNYSSSNSNIITSAATTTTGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAVGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDHSFEEDDEPASEIET 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36800980 36803814 + ClG42_02g0237800.10 Clacu02g2378 244446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2378 364 SUPERFAMILY beta-beta-alpha zinc fingers 273 312 IPR036236 -
Clacu02g2378 364 MobiDBLite consensus disorder prediction 154 174 - -
Clacu02g2378 364 PANTHER ZINC FINGER PROTEIN WIP2 38 363 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Clacu02g2378 364 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Clacu02g2378 364 Gene3D Classic Zinc Finger 252 340 - -
Clacu02g2378 364 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 291 315 - -
Clacu02g2378 364 Pfam Zinc finger, C2H2 type 208 227 IPR013087 -
Clacu02g2378 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 319 IPR013087 -
Clacu02g2378 364 SMART c2h2final6 292 312 IPR013087 -
Clacu02g2378 364 SMART c2h2final6 318 341 IPR013087 -
Clacu02g2378 364 SMART c2h2final6 208 230 IPR013087 -
Clacu02g2378 364 SMART c2h2final6 255 287 IPR013087 -
Clacu02g2378 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Clacu02g2378 364 Gene3D Classic Zinc Finger 207 230 - -
Clacu02g2378 364 FunFam Zinc finger protein WIP2 261 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1272 Clacu-Chr1:22008979 Clacu02g2378 Clacu-Chr2:36800980 2.10E-83 transposed
Clacu03g0988 Clacu-Chr3:15580938 Clacu02g2378 Clacu-Chr2:36800980 2.90E-86 transposed
Clacu04g0129 Clacu-Chr4:3108048 Clacu02g2378 Clacu-Chr2:36800980 8.60E-98 transposed
Clacu10g1710 Clacu-Chr10:30592900 Clacu02g2378 Clacu-Chr2:36800980 7.30E-95 transposed
Clacu02g2378 Clacu-Chr2:36800980 Clacu09g0418 Clacu-Chr9:3713651 5.60E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47357 None None None None Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2378 - - - 0.0