Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2382 ATGGATTCGCCTCAGCCATCCCCACCAGAGCTTCATCTTCACGGTCTCACACCCCTCAAAGTTCTCGGAAAAGGAGCCATGGGAACCGTCTTCCTCGTCCACGACCGCCTTTCCGATGAGCCGGCTCATTTCCCCTTTGCTCTCAAAGTCGTCGAGAAATCCTCTTTCGTCTCCAAACTCGACGCCGACCGGCGAGCTCGTTGGGAGATTCAGGTTCTTTCTCGTTTGTCCTTCCCTAAACCCCACCCTTTCCTCCCCCGCATTATTGGTTCCTTCGAATCCCATGAGTTTTTGGGCTGGGCCGTTCCGTACTGTCCCGGCGGCGATCTTAACGTCTTGCGTTACCGTCAATTGGACCGTGTTTTCTCGCCGGCAGTCATTCGGTTCTATTTGGCCGAGATCGTCTGTGCGCTTGACCATCTTCATAGCATGGGCATCGTCTACCGAGATTTGAAGCCAGAGAATGTGTTAATTCAACAATCGGGTCACGTCACTCTCACGGACTTCGATTTGTCGCGTAGTTTGACACGCAGAACAGTAAAGGACGTCGTCTCGCTTGATAACTCCAACCACGAGAAGCCGCCGATCGCCGTCCGCCCAAAACACGGGCGAAACTTGACGCGATGGATTATGACGACCTCCAATGTTAAAGGCGGGTTAAAAAAGGCTAAATCGGCTCGGGTTAGTCCTGTGAGTCGCCGGAAGCCGAGTTTCACGAATGGCGAGCGGTCAAATTCGTTCGTCGGAACGGAGGAGTATGTCTCACCGGAGGTTGTTCGAGGCGACGGTCATGAATTCGCCGTCGACTGGTGGGCCCTGGGGATTCTCACGTACGAGATGCTCTACGGGACGACGCCGTTTAAGGGGAAAAACAGGAAAGAGACGTTCCGAAACGTTTTGGTTAAAGCTCCGGAGTTGATTGGAAAGCGTTCGGATTTAACGGATTTGATCGAACGGTTGCTGGTAAAAGACCCCACGAAGCGGTTGGGGTACGTAAGGGGCGCGTGCGAGATCAAAGAGCATGCGTTTTTTAACGGCGTTAAGTGGGACCTATTAACGGAGGTCACGAGACCGCCGTTTTTACCTCCTCGTGAAGAAACGGAATGGGCGGAGAATTTAACGCTCGGTTGTGTGAGTATAGCGGAATACTTTCTCAGACAGAGATCGCCACCTTCGTTTCCACCGTCGCCGTCGTCAACTCCGTCGACCTCCTTCAGTTGGCAGAATAACATGTCATTGACGGAGTTCTGA 1251 53.0 MDSPQPSPPELHLHGLTPLKVLGKGAMGTVFLVHDRLSDEPAHFPFALKVVEKSSFVSKLDADRRARWEIQVLSRLSFPKPHPFLPRIIGSFESHEFLGWAVPYCPGGDLNVLRYRQLDRVFSPAVIRFYLAEIVCALDHLHSMGIVYRDLKPENVLIQQSGHVTLTDFDLSRSLTRRTVKDVVSLDNSNHEKPPIAVRPKHGRNLTRWIMTTSNVKGGLKKAKSARVSPVSRRKPSFTNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTKRLGYVRGACEIKEHAFFNGVKWDLLTEVTRPPFLPPREETEWAENLTLGCVSIAEYFLRQRSPPSFPPSPSSTPSTSFSWQNNMSLTEF 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36853539 36854789 + ClG42_02g0238200.10 Clacu02g2382 244450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2382 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g2382 416 FunFam Serine/threonine-protein kinase UCNL 16 108 - -
Clacu02g2382 416 SMART serkin_6 16 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2382 416 Pfam Protein kinase domain 19 182 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2382 416 Pfam Protein kinase domain 239 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2382 416 Gene3D Phosphorylase Kinase; domain 1 18 108 - -
Clacu02g2382 416 ProSiteProfiles Protein kinase domain profile. 16 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2382 416 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524(InterPro)
Clacu02g2382 416 FunFam Serine/threonine-protein kinase OXI1 242 363 - -
Clacu02g2382 416 PANTHER FLIPPASE KINASE 1-RELATED 11 365 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Clacu02g2382 416 MobiDBLite consensus disorder prediction 391 416 - -
Clacu02g2382 416 FunFam Serine/threonine-protein kinase OXI1 109 177 - -
Clacu02g2382 416 Gene3D Transferase(Phosphotransferase) domain 1 241 363 - -
Clacu02g2382 416 Gene3D Transferase(Phosphotransferase) domain 1 109 177 - -
Clacu02g2382 416 SUPERFAMILY Protein kinase-like (PK-like) 16 411 IPR011009 -
Clacu02g2382 416 MobiDBLite consensus disorder prediction 399 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2382 Clacu-Chr2:36853539 Clacu09g0847 Clacu-Chr9:7872016 2.80E-77 dispersed
Clacu02g2382 Clacu-Chr2:36853539 Clacu02g2251 Clacu-Chr2:35616986 3.50E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73384 PF00069 Pkinase 1.20E-30 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2382 - - - 0.0