Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2418 ATGAGCTGTTGCTGTCTAATGGCTGTTAGTCACTCAAGTCTTCCTCTTATCCTGTGCATGGACTTAAAGTTTGGTCTGTGCCTATTCTTTGTAGTCATGGATGAGCCTTCCATCAGTTCCACAAGCTCGCAATTAACTGTGGATTTCTATAAGAGTTCATGTCCGAATGTTCTCAGAACCGTAAGGAGAGAAGTCATGAATGCTATTAAGAATGAGATGCGAATGGCTGCTTCGCTTCTTCGCCTCCACTTTCACGACTGCTTTGTTAATGGTTGTGACGGATCCGTGCTGTTGGATGGAAGTGATGGGGAGAAATTTGCACTTCCCAACATCAATTCTCTTAGAGGGCTTGAAGTTGTGGATAGAATCAAAGCCGCACTGGAGAGTTCATGCCCCGGAGTTGTATCATGTGCTGATTTATTAACTATAGCTGCAAGAGATTCTGTCCTCTTGAGTGGAGGACCGTCATGGAAGGTTTTATTGGGGAGAAGAGATGGATTGGTAGCGAATAAAACAGGAGCTGATCAAGGACTTCCCTCTCCATTTGAAAGCGTTAATGGTATAATCAACAAGTTTGTTGATGTTGGCCTTGATATCACCGACCTCGTCGCTTTATCTGGAGCCCATACAATTGGATTTGCAAGATGTGCAATGTTCAACAATAGGCTGTTCAACTTCTCAGGAAGTGGTTCTCCAGACCCAACCATGGAGTCCGCCATGGTATCTGATCTCCAAGCTTTATGCCCTCTCACCGACGACGGCAACAAGACCACCGTTCTCGACAGAAACTCCACCGATTTATTCGACAACCATTACTTCAAAAACTTGCTCAACCGGAAGGGCCTCTTGGGCTCCGACCAAATTCTGTTCTCCGACTCCGACGATGCTGCTCAGCCTCAAACCACCACTACAAAAGCCTTGGTCCAAGCTTATAGCTCTAACACCACGCTTTTCTTCGCCGACTTTGTCAAAGCCATGATCAAGATGGGGAATATAAGTCCACTCACCGGCTCCGCCGGTCAGATCCGAAACAATTGCAGACTCCTTAATTCCTCCTAA 1059 46.18 MSCCCLMAVSHSSLPLILCMDLKFGLCLFFVVMDEPSISSTSSQLTVDFYKSSCPNVLRTVRREVMNAIKNEMRMAASLLRLHFHDCFVNGCDGSVLLDGSDGEKFALPNINSLRGLEVVDRIKAALESSCPGVVSCADLLTIAARDSVLLSGGPSWKVLLGRRDGLVANKTGADQGLPSPFESVNGIINKFVDVGLDITDLVALSGAHTIGFARCAMFNNRLFNFSGSGSPDPTMESAMVSDLQALCPLTDDGNKTTVLDRNSTDLFDNHYFKNLLNRKGLLGSDQILFSDSDDAAQPQTTTTKALVQAYSSNTTLFFADFVKAMIKMGNISPLTGSAGQIRNNCRLLNSS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37159050 37164453 + ClG42_02g0241800.10 Clacu02g2418 244486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2418 352 FunFam Peroxidase 179 329 - -
Clacu02g2418 352 PRINTS Plant peroxidase signature 259 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Plant peroxidase signature 153 168 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Plant peroxidase signature 115 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Plant peroxidase signature 200 212 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Plant peroxidase signature 78 98 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Plant peroxidase signature 134 144 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Plant peroxidase signature 275 292 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Plant peroxidase signature 54 73 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 ProSiteProfiles Plant heme peroxidase family profile. 44 350 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 ProSitePatterns Peroxidases proximal heme-ligand signature. 201 211 IPR019793 -
Clacu02g2418 352 ProSitePatterns Peroxidases active site signature. 76 87 IPR019794 GO:0004601(InterPro)
Clacu02g2418 352 SUPERFAMILY Heme-dependent peroxidases 44 350 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Haem peroxidase superfamily signature 153 165 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Haem peroxidase superfamily signature 76 90 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Haem peroxidase superfamily signature 261 276 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Haem peroxidase superfamily signature 201 216 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 PRINTS Haem peroxidase superfamily signature 135 152 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 Gene3D Peroxidase, domain 2 179 332 - -
Clacu02g2418 352 PANTHER PEROXIDASE 72-RELATED 26 347 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 Pfam Peroxidase 61 313 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2418 352 FunFam Peroxidase 48 189 - -
Clacu02g2418 352 CDD secretory_peroxidase 44 347 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu02g2418 352 Gene3D - 50 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1734 Clacu-Chr1:29503881 Clacu02g2418 Clacu-Chr2:37159050 1.50E-89 dispersed
Clacu01g2054 Clacu-Chr1:32336989 Clacu02g2418 Clacu-Chr2:37159050 1.20E-83 dispersed
Clacu02g2418 Clacu-Chr2:37159050 Clacu07g0875 Clacu-Chr7:21869346 1.20E-81 dispersed
Clacu02g2418 Clacu-Chr2:37159050 Clacu02g2419 Clacu-Chr2:37168532 2.40E-77 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2418 K00430 - csv:101211257 524.242