Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2421 ATGGGTTCCCCTAAATTAACAGCCTTAGTTGCAGTGTTAGCTTTGATGCTGGGATCCTCTCAGGCTCAGCTTAACCCTTTCTTCTACACCTTCACATGCCCTCAGCTGCCTTTTGTTGTTCTAAATGTGGTCTCACAAGCTCTCCAAACCGATGATCGAGCAGCTGCCAAGCTCATTCGTCTTCACTTTCACGACTGCTTCGTCAATGGGTGTGACGGGTCTGTGCTACTAGAAGACGTACCGGGAGTCATCGATAGTGAATTAAACGCACCTCCCAACAACGGAATCCAAGGGCTGGACATTGTGGACAACATCAAAGCAGCAGTTGAAAGCGCTTGCCCGGGCGTTGTCTCCTGTGCTGACATCTTAGCGCTCTCAGCTCAAGTTTCTGTCGTATTGTCTGGAGGGCCGGCATGGGTTGTTCCACTGGGAAGAAAAGACAGCAGAAGAGCAAACAGAACTGCAGCTGCAAATCTTCCGAGTCCATTTGAAACTCTAGACGTGTTGAAAGCCAAATTTGCGGCACTTGGGCTGGGTTCTACAGATTTGGTGACTCTATCAGGAGCCCACACATTTGGTCGATCCAGATGCCTCTTTTTCACAGGACGGTTCGACAATTTCAATAACACTGGTCTGCCAGACCCTACTTTGGATGCTGCTTACAGGGAGCAGCTCCGTCAAGCTTGTACCACTCCTGGAACGCGAGTAAGCTTTGACCCGATCACACCAGACACCTTTGATAAAAACTACTACATCAATCTTCAAAATCACAAAGGACTTCTCCAAAGTGATCAAGAGCTTTTCTCAACTCCCGGGGCTGATACAACTGCCATTGTCAATACATTTGCCGCTAGCCAGCTTTTGTTCTTCATTCAATTTGGGAATTCCATGATTAAAATGGGAAATCTGAGCCCTCCACCTGGTATCCCATCTGAAGTCAGATTGAACTGTAGAAAGGTCAACCCACCCACTGTTCTACATGATGTTATCTAA 993 47.53 MGSPKLTALVAVLALMLGSSQAQLNPFFYTFTCPQLPFVVLNVVSQALQTDDRAAAKLIRLHFHDCFVNGCDGSVLLEDVPGVIDSELNAPPNNGIQGLDIVDNIKAAVESACPGVVSCADILALSAQVSVVLSGGPAWVVPLGRKDSRRANRTAAANLPSPFETLDVLKAKFAALGLGSTDLVTLSGAHTFGRSRCLFFTGRFDNFNNTGLPDPTLDAAYREQLRQACTTPGTRVSFDPITPDTFDKNYYINLQNHKGLLQSDQELFSTPGADTTAIVNTFAASQLLFFIQFGNSMIKMGNLSPPPGIPSEVRLNCRKVNPPTVLHDVI 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37183597 37184849 + ClG42_02g0242100.10 Clacu02g2421 244489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2421 330 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 ProSiteProfiles Plant heme peroxidase family profile. 23 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Clacu02g2421 330 SUPERFAMILY Heme-dependent peroxidases 23 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 FunFam Peroxidase 27 172 - -
Clacu02g2421 330 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Clacu02g2421 330 Gene3D - 28 321 - -
Clacu02g2421 330 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 Pfam Peroxidase 41 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 Gene3D Peroxidase, domain 2 160 300 - -
Clacu02g2421 330 PANTHER PEROXIDASE 72-RELATED 11 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2421 330 FunFam Peroxidase 160 300 - -
Clacu02g2421 330 CDD secretory_peroxidase 23 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2419 Clacu-Chr2:37168532 Clacu02g2421 Clacu-Chr2:37183597 3.90E-102 dispersed
Clacu02g2421 Clacu-Chr2:37183597 Clacu02g2425 Clacu-Chr2:37221016 1.90E-113 dispersed
Clacu02g2420 Clacu-Chr2:37175620 Clacu02g2421 Clacu-Chr2:37183597 8.30E-120 tandem
Clacu02g2421 Clacu-Chr2:37183597 Clacu02g2422 Clacu-Chr2:37187751 1.00E-138 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2421 K00430 - csv:101211752 600.127