Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2422 ATGGCTTCCCTTAAATTCCTAGCCATTGTTGTGGTGGCTGCTTTGATGCTATCACCTTCTCACGCCCAGCTTTCCCCGTTCTTCTACGCCCAATCATGCCCTAAGCTGCCTTTCCTTGTTCTCAACGTGGTTGCCCGAGCTCTACAAACCGATGATCGAGCTGCTGCCAAACTCATTCGCCTCCATTTTCACGATTGCTTCGTTAATGGGTGTGATGGATCTGTGCTATTGGTGGACGTACCGGGCGTCATCGATAGTGAATTAAACGGACCTCCAAATCAAGGAATCCAAGGGATGGACATTGTGGACAACATCAAAGCAACAGTTGAAAGTGCTTGTCCAGGCGTTGTTTCCTGTGCTGACATCTTAGCCATTTCGGCTCAAATCTCGGTTTTCTTGTCGGGAGGACCAATGTGGGCAGTACCAATGGGAAGAAGAGACAGTAGGATAGCCAATAGAACCGGAACCTCAAACCTGCCGGGTCCCTCAGAAAGTCTAGACGGACTTAAAGCCAAGTTTGGGGTTCATGGGCTTGATTCTACCGATCTGGTGGCTCTATCAGGAGCCCACACGTTCGGCCGATCAAGATGCCTCTTCTTCAGTGACCGCTTCAACAACTTCAACAACACCGGCAGACCCGACCCCACACTTAACCCAGCATACAGGGAGCAGCTTCGAAGACAATGTACATCCCAACAAACACGAGTGAATTTCGATCCAATCACACCCACTAGATTCGACAAGGCCTATTACACCAATCTCGTCAGCTTGAGGGGGCTTCTCCAAAGTGACCAAGAGCTGTTCTCAACCCCCAGGGCTGATACCACAGCCATCGTCAGAACTTTCGCCGCCAACCAACCTGCCTTCTTTAACCAATTTGTGAAATCCATGATCAAAATGGGCAATCTCAAGCCTCCCCCTGGCATTGCTTCGGAAGTCAGATTGGATTGTAAGAGGGTCAATCGTGCCAGAGCCTACGACGTAATGTAA 990 49.9 MASLKFLAIVVVAALMLSPSHAQLSPFFYAQSCPKLPFLVLNVVARALQTDDRAAAKLIRLHFHDCFVNGCDGSVLLVDVPGVIDSELNGPPNQGIQGMDIVDNIKATVESACPGVVSCADILAISAQISVFLSGGPMWAVPMGRRDSRIANRTGTSNLPGPSESLDGLKAKFGVHGLDSTDLVALSGAHTFGRSRCLFFSDRFNNFNNTGRPDPTLNPAYREQLRRQCTSQQTRVNFDPITPTRFDKAYYTNLVSLRGLLQSDQELFSTPRADTTAIVRTFAANQPAFFNQFVKSMIKMGNLKPPPGIASEVRLDCKRVNRARAYDVM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37187751 37189020 + ClG42_02g0242200.10 Clacu02g2422 244490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2422 329 ProSiteProfiles Plant heme peroxidase family profile. 23 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 Gene3D - 28 321 - -
Clacu02g2422 329 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 Gene3D Peroxidase, domain 2 160 300 - -
Clacu02g2422 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Clacu02g2422 329 FunFam Peroxidase 27 171 - -
Clacu02g2422 329 SUPERFAMILY Heme-dependent peroxidases 23 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Clacu02g2422 329 PANTHER PEROXIDASE 72-RELATED 9 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 Pfam Peroxidase 41 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2422 329 FunFam Peroxidase 160 300 - -
Clacu02g2422 329 CDD secretory_peroxidase 23 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2422 Clacu-Chr2:37187751 Clacu02g2425 Clacu-Chr2:37221016 5.90E-107 dispersed
Clacu02g2421 Clacu-Chr2:37183597 Clacu02g2422 Clacu-Chr2:37187751 1.00E-138 tandem
Clacu02g2422 Clacu-Chr2:37187751 Clacu02g2423 Clacu-Chr2:37193822 7.80E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2422 K00430 - csv:101211989 568.54