Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2423 ATGTCTTCTTACCTCAAACCATCTTCCTCAATCCTCAAACCATCGTCTTCTTCCCTAAACCTTCTGACCATCCTCGCCTTCTTCCGAATCCCCGAGAACCCTCGTTTTCTTCCTGCAAAACGACTGAATCTTCTCGATTTTGGTCGGATCTTCATTCGTCGTTGGATTCTACAAAATTACCTTCAATATCTTCAAAGGTCTTATGCCCAACTCTCCGAGAACTTCTACGACCAAACTTGCCCTCGTCTCCCTAACATTGTCCGCCGTGAGGTCAAGAGAGCTATCGAAACTGACATCCGTGCCGGTGCGAAACTCATTCGCTTCCATTTCCATGATTGCTTCGTCCAAGGTTGCGACGGCTCTGTTTTGCTAGAGGATGCTCCTGGCATAGACAGTGAGTTGAACGGACTTGGAAATTTAGGAATCCAAGGATTGGAGATTGTCGATGCTATCAAAGCCGCTGTCGAGAGGGAATGTCCCGGCATAGTCTCATGCGCCGACATCCTAGCTCAAGCCTCTAAAGACTCTGTGGACGTGCAAGGAGGGCCCAGTTGGAGAGTTTTATACGGAAGAAGAGATAGCAGAACAGCCAATAGATCAGGGGCTGATGAACTCCCAAGTCCCTTTGAAAATCTTGACCAACTCAAAAGAAAGTTTGAAGTCGTTGGGTTGAATTCCACTGATCTTGTTGCTTTATCAGGAGCACATACGTTTGGTCGGTCAAGATGCATGTTCTTCAGTGACCGTTTGTCCAACTTCAGTGGGAGTGGGCAACCAGATCCGACCCTAGATCCAACCTACAGGCAAGAACTGGAAAGAGCTTGTACAAGTCCAGAAACACGAGTGAATTTGGATCCAACAACACCGGACACATTTGACAAAAATTACTTCACCAATCTTCAAGCCAATCGAGGTCTTCTTAAGAGCGACCAAATTCTGTTCACTACTGGAGGGGCCGACACAATTGCCATTGTCAACCTTCTTGGATCGCGAGAAGGCACCTTCTTTAGACAATTTCGGCTCTCCATGATTAAGATGGGAAATATTAGACCCTTAACCGGAACCCAAGGGGAAATCAGAAGAAACTGCAGGAGGGTCAATGACTTGGGAGGTGAAGCAGGACATGATGTTATGTAA 1137 46.79 MSSYLKPSSSILKPSSSSLNLLTILAFFRIPENPRFLPAKRLNLLDFGRIFIRRWILQNYLQYLQRSYAQLSENFYDQTCPRLPNIVRREVKRAIETDIRAGAKLIRFHFHDCFVQGCDGSVLLEDAPGIDSELNGLGNLGIQGLEIVDAIKAAVERECPGIVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRTANRSGADELPSPFENLDQLKRKFEVVGLNSTDLVALSGAHTFGRSRCMFFSDRLSNFSGSGQPDPTLDPTYRQELERACTSPETRVNLDPTTPDTFDKNYFTNLQANRGLLKSDQILFTTGGADTIAIVNLLGSREGTFFRQFRLSMIKMGNIRPLTGTQGEIRRNCRRVNDLGGEAGHDVM 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37193822 37196334 + ClG42_02g0242300.10 Clacu02g2423 244491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2423 378 ProSiteProfiles Plant heme peroxidase family profile. 70 367 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 ProSitePatterns Peroxidases proximal heme-ligand signature. 228 238 IPR019793 -
Clacu02g2423 378 SUPERFAMILY Heme-dependent peroxidases 70 367 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 Gene3D - 75 367 - -
Clacu02g2423 378 FunFam Peroxidase 74 219 - -
Clacu02g2423 378 Pfam Peroxidase 87 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Plant peroxidase signature 162 172 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Plant peroxidase signature 227 239 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Plant peroxidase signature 283 298 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Plant peroxidase signature 80 99 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Plant peroxidase signature 299 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Plant peroxidase signature 341 354 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Plant peroxidase signature 143 156 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Plant peroxidase signature 181 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Plant peroxidase signature 104 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Haem peroxidase superfamily signature 163 180 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Haem peroxidase superfamily signature 102 116 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Haem peroxidase superfamily signature 285 300 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Haem peroxidase superfamily signature 181 193 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 PRINTS Haem peroxidase superfamily signature 228 243 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 FunFam Peroxidase 206 346 - -
Clacu02g2423 378 PANTHER PEROXIDASE 72-RELATED 59 366 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2423 378 Gene3D Peroxidase, domain 2 206 346 - -
Clacu02g2423 378 CDD secretory_peroxidase 70 366 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2423 Clacu-Chr2:37193822 Clacu02g2425 Clacu-Chr2:37221016 8.80E-139 dispersed
Clacu02g2422 Clacu-Chr2:37187751 Clacu02g2423 Clacu-Chr2:37193822 7.80E-107 tandem
Clacu02g2423 Clacu-Chr2:37193822 Clacu02g2424 Clacu-Chr2:37207867 1.40E-168 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2423 K00430 - csv:101212230 490.345