Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2424 ATGGGGTCATTCAATTTCTTGCTTCTGTTTGTGGGTGTTTTGTTTGGAAGGTCTTATGCCCAACTCACCGAGAACTTCTACGACCAAACTTGCCCTCGCCTCCCTAACATTGTCCGCCGTGAGGTCAAGAGAGCTATCGAAACCGACATCCGTGCCGGGGCAAAACTCATTCGCTTCCATTTCCATGATTGCTTCGTTCAAGGTTGCGATGGCTCTGTTTTGCTAGAGGATGCTCCCGGCATAGACAGTGAGCTGAATGGACTTGGAAATTTAGGAATCCAAGGACTTGAGATTGTCGACGCCATCAAAGCCGCCGTCGAGAGGGAATGTCCTGGCATTGTCTCATGTGCAGACATCCTAGCTCAAGCATCTAAAGACTCTGTTAATTTGCAAGGAGGACCCAGTTGGAGAGTTTTATATGGAAGAAGAGATAGCAGAACCGCCAATAAAACAGGGGCTGATGAACTCCCAAGTCCCTTTGAAAATCTTGCCCAACTCAAGAAAAAGTTCAAAGACGTTGACTTGGATTCCATTGATCTTGTTGCTCTATCTGGGGCACATACGTTTGGTCGGTCGAAATGCATGTTCTTCAGCGACCGTTTGTCCAACTTTAGTGGGAGTGGGCATCCAGATCCGACCTTGGATCCAACCTATAGGCAAGAACTGAAAAAAGCTTGTACAAGTCCAGAAACACGAGTGAATTTGGATCCAACAACACCGGACACATTTGACAAAAATTACTTCACCAATCTTCAAGCCAATCGAGGTCTTCTACGGAGCGACCAAGTTCTATTCTCTACTGGAGGGGCCGACACAATTGCCATTGTCAACAATCTTGGGTCGCGAGAAGAAACTTTCTCTAGACAATTTCAGCTGTCCATGATTAAGATGGGAAATATTAAACCCTTAACTGGAACCCAAGGAGAAATTAGAAGAAACTGTAGGAGGGTCAATGACTTGGAAGATGAAGCAGGGCATGATGTTATGTAA 990 45.76 MGSFNFLLLFVGVLFGRSYAQLTENFYDQTCPRLPNIVRREVKRAIETDIRAGAKLIRFHFHDCFVQGCDGSVLLEDAPGIDSELNGLGNLGIQGLEIVDAIKAAVERECPGIVSCADILAQASKDSVNLQGGPSWRVLYGRRDSRTANKTGADELPSPFENLAQLKKKFKDVDLDSIDLVALSGAHTFGRSKCMFFSDRLSNFSGSGHPDPTLDPTYRQELKKACTSPETRVNLDPTTPDTFDKNYFTNLQANRGLLRSDQVLFSTGGADTIAIVNNLGSREETFSRQFQLSMIKMGNIKPLTGTQGEIRRNCRRVNDLEDEAGHDVM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37207867 37209463 + ClG42_02g0242400.10 Clacu02g2424 244492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2424 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 179 189 IPR019793 -
Clacu02g2424 329 PANTHER PEROXIDASE 72-RELATED 15 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 ProSiteProfiles Plant heme peroxidase family profile. 21 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 FunFam Peroxidase 25 171 - -
Clacu02g2424 329 Gene3D Peroxidase, domain 2 157 297 - -
Clacu02g2424 329 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 SUPERFAMILY Heme-dependent peroxidases 21 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 CDD secretory_peroxidase 21 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu02g2424 329 Gene3D - 26 318 - -
Clacu02g2424 329 Pfam Peroxidase 38 278 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 FunFam Peroxidase 157 297 - -
Clacu02g2424 329 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2424 329 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2424 Clacu-Chr2:37207867 Clacu02g2426 Clacu-Chr2:37230107 5.90E-107 dispersed
Clacu02g2423 Clacu-Chr2:37193822 Clacu02g2424 Clacu-Chr2:37207867 1.40E-168 tandem
Clacu02g2424 Clacu-Chr2:37207867 Clacu02g2425 Clacu-Chr2:37221016 1.00E-135 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2424 K00430 - csv:101212230 477.248