Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2425 ATGGCCTCCGCCAATGCCGCAGCCTCCTTTTTCTTTCTGGCTCTTCTCTTCGGAGGCTCTTTAGCTCAACTCTCCGAGACCTTTTACGATCAAACCTGCCCTCGCCTCCCCAACATTGTCCGTGCCTCCGTCAAAAGAGCTATCGAAACCGACATCCGTGCCGGTGCTAAACTCATCCGCCTCCATTTTCATGACTGCTTCGTCAATGGATGTGATGGCTCTGTTTTGCTAGAAGATGCTCCTGGCATAGTCAGTGAGCTCAACTCACCTGGAAATCAAGGAATCCAAGGCCTCGAGATTGTTGACGCCATTAAAGCCGACGTTGAGAGGGAATGCCCCGGCATCGTCTCCTGTGCCGACATTCTAGCTCAAGCTTCCAAGGACTCTGTCGATGTGCAAGGAGGGCCTAGTTGGAGAGTGTTATACGGAAGACGAGACAGTAGAATAGCGAACAAAACAGGGGCGGATAGTGGGTTGGCCAGTCCCTTCGAAACTCTAGACCAACTCAAAGCTAAATTTGCTGCTGTTGGCCTTGGTACCACTGATCTCGTCGCTTTATCAGGAGCGCATACGTTTGGTCGATCGAGATGCAGATTCTTCAGCCACCGATTTGCGAATTTCAACAACACTGGAAGGCCAGACCCATCACTGGATGCTAACTACAGAGGATTCCTTGAAGGGGTTTGCTCAGCAGGTCCAGACACAAGAGCCAACTTCGACCCAGTAACACCTGACGTGTTCGACAAAAACTACTACACAAATCTTCAAGTTGGGAAGGGGCTTCTGCAAAGTGACCAAGAGCTGTTCTCTACTCCAGGGGCTGACACCATCGCCATTGTCAACAGCTTCGCAGCCAGAGAAGGCACCTTCTTCAAGGAGTTCCGGCAGTCCATGATCAACATGGGGAACATCAAGCCTTTGACTGGTAGCCGTGGGGAAATTAGAAGAAACTGCAGGAGGGTTAACTCTGGGTTGGGTGGAGAAGGGCATGATGTTATGTAA 1002 50.9 MASANAAASFFFLALLFGGSLAQLSETFYDQTCPRLPNIVRASVKRAIETDIRAGAKLIRLHFHDCFVNGCDGSVLLEDAPGIVSELNSPGNQGIQGLEIVDAIKADVERECPGIVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRIANKTGADSGLASPFETLDQLKAKFAAVGLGTTDLVALSGAHTFGRSRCRFFSHRFANFNNTGRPDPSLDANYRGFLEGVCSAGPDTRANFDPVTPDVFDKNYYTNLQVGKGLLQSDQELFSTPGADTIAIVNSFAAREGTFFKEFRQSMINMGNIKPLTGSRGEIRRNCRRVNSGLGGEGHDVM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37221016 37222274 + ClG42_02g0242500.10 Clacu02g2425 244493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2425 333 PANTHER PEROXIDASE 72-RELATED 13 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 FunFam Peroxidase 27 173 - -
Clacu02g2425 333 FunFam Peroxidase 160 301 - -
Clacu02g2425 333 CDD secretory_peroxidase 23 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu02g2425 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Clacu02g2425 333 SUPERFAMILY Heme-dependent peroxidases 23 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Clacu02g2425 333 ProSiteProfiles Plant heme peroxidase family profile. 23 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g2425 333 Gene3D - 28 322 - -
Clacu02g2425 333 Gene3D Peroxidase, domain 2 160 301 - -
Clacu02g2425 333 Pfam Peroxidase 40 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2420 Clacu-Chr2:37175620 Clacu02g2425 Clacu-Chr2:37221016 9.10E-127 dispersed
Clacu02g2421 Clacu-Chr2:37183597 Clacu02g2425 Clacu-Chr2:37221016 1.90E-113 dispersed
Clacu02g2422 Clacu-Chr2:37187751 Clacu02g2425 Clacu-Chr2:37221016 5.90E-107 dispersed
Clacu02g2423 Clacu-Chr2:37193822 Clacu02g2425 Clacu-Chr2:37221016 8.80E-139 dispersed
Clacu02g2425 Clacu-Chr2:37221016 Clacu07g0875 Clacu-Chr7:21869346 1.80E-74 dispersed
Clacu02g2424 Clacu-Chr2:37207867 Clacu02g2425 Clacu-Chr2:37221016 1.00E-135 tandem
Clacu02g2425 Clacu-Chr2:37221016 Clacu02g2426 Clacu-Chr2:37230107 5.80E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2425 K00430 - csv:101217543 592.038