Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2427 ATGGGAAAATGCTGGCTTCTAGTTATAAACAGAGATGATTGTATGAGTACCATAGAATTCAGAGAGAAGGGGATGTATCAGCAGCCGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTGCATCAATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCCCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCGAGGGTTCAGAACTGTTGCCCGACCTGCCGGCATGAGCTGGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATATTACAGCAAGCTTAAACATGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACTGGTGATATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTCGGACGACAATTCTGTTTGCACTTCGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGAGACGATGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCTAGAAGTATCCGCGATAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGGCGAATATGGAGAGTAAGAGTCTTCACCGGCTTAAACCCTAAACCCTGTGGAGTTGGCGTAGTGGGAAGGAAGAAAACCGCCGAACAAATGCTGATTACTCGAAAGCTTTCTGCTTCGAACCTCAAATCCTTTCTTTCTCTGCGTTTCGTTTCCCCTTCTCTGACTTCGCACTTGTTTTCTTCACCTCTCTGCTTAAACCCACCAATCCTTTGCCCACTTCCTCCCACTCTTTCGCCGTCTTTCTCTTCCAAACCCACACCTCCAGAAGCTTCCAACCTCACCCGCGATGGCAACTACGACGAAGCCACTTCCCGATTCTCCCTCGTCTGCCCTGGCTGTGGAGTTCACATGCAAGACACCAATCCCAAACATCCTGGCTTCTTCGTCAAACCCTCGAGAAAAGATTCCAATTATCGCTTACTTACCCATCTTGTCCCCGTCCATGATGAATCTGAATGCTCCGAATTTCTCAAGAGAGGCCTAGTAATCGAGCCAGATAATCAGAAAACTGAAGAGAATGTGACCGAGAAACCCCACAAGCCGACCGTGTGTTCGCGGTGCCACTCATTGAGGCATTATGGGAAGGTAAAGGATCCTTCAGTAGAGAATTTACTGCCGGATTTTGATTTCGATCATACCATCGGTAGGAGACTGGCGTCGACTTCGGGAACCCGATCTGTTGTTCTGATCGTCGTTGATGCTGCAGATTTTGATGGGTCATTCCCAAAGAAGGTAGCGAACTTGGTCTCGGCCACTATTGAGGATAATTCAGCTGCCTGGAAACAGGGGAAATCAGGGAATGTGCCTAGAGTGGTGCTTGTAGTGACAAAAATTGATCTGCTGCCTAGCTCTTTATCACCGACGAGATTTGAGCATTGGGTGAGGCAGAGAGCGAGGGAGGGAGGGATTAACAAGATAACGAGTTTGCATATGGTGAGTGCGGTTAGAGATTGGGGGCTGAAAATTTTGGTGGAGGATGTAATTGAATTGGTTGGGGCGAGAGGAAATGTGTGGGCAATTGGAGCACAAAATGCTGGGAAAAGCACGCTGATTAATTCAATAGGAAAGCATGTAGGTGGGAAGATTACGCAGTTGACTGAAGCACCAGTTCCTGGGACAACGTTGGGGATAATCAGAGTAGAGGGAATTTTTCCGGGTCAAGCCAAATTGTTTGATACTCCTGGGCTTCTCAATCCCCATCAGATTACTACGAGATTGACTAGGGAAGAGCAGAAACTTGTTCACATCAGCAAGGAATTGAAGCCCAGGACTTACAGGATTAAGGTTGGTCACACAATTCATGTTGCTGGCCTCATGAGGCTAGATGTGGAAGAAACAACTGTGGATACAATTTATGTTACGGTGTGGGCATCTCCTTATCTTCCATTACACATGGGGAAAACAGAAAATGCAACCAAAATACAGGAGGACCATTTTGGGAATCAATTGCAGCCACCTATAGGCAAAGATCGAGTTGCAGAACTTGGAAAATGGGTGAGAAGGGAATTTCGTGTTTGTGGAAGTAGTTGGGATTCAAGTTGTGTAGATGCTGCTGCTGCTGGCCTGGGTTGGTTCGCCATTGGACTAAAAGGCGAGGCAGTCTTGAGCATATGGACTTATGAGGGGATCGAGGTTGTTATACGAAGTTCTGTCATTCCTTACAGATCAAACTTCTTTGAAGATGCTGGATTTACAGTCTCGAAAATTGTCTCCAAGGCTGATCAGGTTGCAAATAAACCACATGATCAAAGCGAAAAGAAGAAGAAAAAGGGTGACCCCAAAGTTCGTGTGCTGACTGAGACGTCAGTATCGAAATCTCGCTCCAAATATGATTCTGCTTAA 2841 46.22 MGKCWLLVINRDDCMSTIEFREKGMYQQPKSREEHASSAASFCKEVTELRLASIDSQAATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVRVFTGLNPKPCGVGVVGRKKTAEQMLITRKLSASNLKSFLSLRFVSPSLTSHLFSSPLCLNPPILCPLPPTLSPSFSSKPTPPEASNLTRDGNYDEATSRFSLVCPGCGVHMQDTNPKHPGFFVKPSRKDSNYRLLTHLVPVHDESECSEFLKRGLVIEPDNQKTEENVTEKPHKPTVCSRCHSLRHYGKVKDPSVENLLPDFDFDHTIGRRLASTSGTRSVVLIVVDAADFDGSFPKKVANLVSATIEDNSAAWKQGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREGGINKITSLHMVSAVRDWGLKILVEDVIELVGARGNVWAIGAQNAGKSTLINSIGKHVGGKITQLTEAPVPGTTLGIIRVEGIFPGQAKLFDTPGLLNPHQITTRLTREEQKLVHISKELKPRTYRIKVGHTIHVAGLMRLDVEETTVDTIYVTVWASPYLPLHMGKTENATKIQEDHFGNQLQPPIGKDRVAELGKWVRREFRVCGSSWDSSCVDAAAAGLGWFAIGLKGEAVLSIWTYEGIEVVIRSSVIPYRSNFFEDAGFTVSKIVSKADQVANKPHDQSEKKKKKGDPKVRVLTETSVSKSRSKYDSA 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37250556 37257423 + ClG42_02g0242700.10 Clacu02g2427 244495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2427 946 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 199 IPR013083 -
Clacu02g2427 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 559 743 IPR027417 -
Clacu02g2427 946 Pfam Sina, TRAF-like domain 235 332 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Clacu02g2427 946 MobiDBLite consensus disorder prediction 932 946 - -
Clacu02g2427 946 Gene3D - 548 734 IPR027417 -
Clacu02g2427 946 MobiDBLite consensus disorder prediction 911 929 - -
Clacu02g2427 946 PANTHER GENETIC INTERACTOR OF PROHIBITINS 3, MITOCHONDRIAL 418 924 IPR050896 GO:0005739(PANTHER)
Clacu02g2427 946 MobiDBLite consensus disorder prediction 908 946 - -
Clacu02g2427 946 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 143 IPR013083 -
Clacu02g2427 946 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 205 332 IPR008974 GO:0005515(InterPro)
Clacu02g2427 946 CDD RING-HC_SIAHs 89 127 - -
Clacu02g2427 946 FunFam E3 ubiquitin-protein ligase SINAT5-like 200 332 - -
Clacu02g2427 946 Pfam YqeH-like, C-terminal 787 884 IPR048422 -
Clacu02g2427 946 CDD YqeH 517 729 - -
Clacu02g2427 946 ProSiteProfiles Zinc finger RING-type profile. 91 127 IPR001841 -
Clacu02g2427 946 SUPERFAMILY TRAF domain-like 144 335 - -
Clacu02g2427 946 ProSiteProfiles Zinc finger SIAH-type profile. 144 204 IPR013010 GO:0008270(InterPro)
Clacu02g2427 946 FunFam E3 ubiquitin-protein ligase SINAT3 141 199 - -
Clacu02g2427 946 Pfam Sina, zinc finger 140 215 - -
Clacu02g2427 946 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 91 126 IPR049548 -
Clacu02g2427 946 Pfam 50S ribosome-binding GTPase 670 744 IPR006073 GO:0005525(InterPro)
Clacu02g2427 946 SUPERFAMILY RING/U-box 73 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0505 Clacu-Chr1:4994516 Clacu02g2427 Clacu-Chr2:37250556 8.00E-22 dispersed
Clacu02g2427 Clacu-Chr2:37250556 Clacu04g0147 Clacu-Chr4:3637627 5.60E-134 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2427 - - - 0.0