Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2460 ATGAGAAGATCAGGTGTAAACCAACCAAAAGTCAAGCGTCTTGTTGGAAAATACGAAATTGGTCGAACAATTGGTGAGGGTACATTTGCGAAAGTGAAAATTGCCAAAAATTCGGAGACTGGGGATCATGTAGCAATAAAGATTCTCGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATTGCCACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTATTTGAGGTCATGGGGAGCAAAACCAAGATATTTATTGTTTTGGAATTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTATTGTTAGATGCCTACGGGAACCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCCGAGGTCCTTAAGGATAGAGGCTACGATGGTACAACTGCAGACTTATGGTCTTGTGGAGTTATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATCAACCTTTATAAAAAGATCTCGGCTGCTGAATTTACTTGTCCTCCGTGGCTTTCTTTAGATGCCATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTATACCTGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCTGTTTTTGAGGAGCCTAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTCAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTCGAGTTAATTTCAATGTCGAAAGGGCTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAATAAGATCGAAGAAGCTGCAAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTCTGCAAGTTGCGCCTTCTGTCCATGTGGTTGAGATGAGAAAAGCAAAGGGAGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCCCTGGAGGATGTTGTTTGGAAGACGGAGGAAGACATGCAGGAAACAAATTTGGAAACTTTTGTTCTGCAGTCAACAAAGAAAGAAGATGAAATATAG 1380 40.22 MRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSETGDHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLKDRGYDGTTADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITIPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETNLETFVLQSTKKEDEI 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37542285 37548029 + ClG42_02g0246000.10 Clacu02g2460 244528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2460 459 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
Clacu02g2460 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g2460 459 CDD STKc_SnRK3 17 272 - -
Clacu02g2460 459 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Clacu02g2460 459 SMART serkin_6 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2460 459 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Clacu02g2460 459 SUPERFAMILY Protein kinase-like (PK-like) 14 301 IPR011009 -
Clacu02g2460 459 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 423 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu02g2460 459 FunFam Non-specific serine/threonine protein kinase 11 314 - -
Clacu02g2460 459 Pfam NAF domain 313 372 IPR004041 GO:0007165(InterPro)
Clacu02g2460 459 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2460 459 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2460 459 CDD CIPK_C 317 431 - -
Clacu02g2460 459 Gene3D Transferase(Phosphotransferase) domain 1 98 280 - -
Clacu02g2460 459 FunFam Non-specific serine/threonine protein kinase 310 435 - -
Clacu02g2460 459 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Clacu02g2460 459 Gene3D Kinase associated domain 1, KA1 310 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2559 Clacu-Chr1:35853039 Clacu02g2460 Clacu-Chr2:37542285 2.70E-172 dispersed
Clacu02g2460 Clacu-Chr2:37542285 Clacu03g0658 Clacu-Chr3:7234287 4.60E-182 dispersed
Clacu06g0047 Clacu-Chr6:642745 Clacu02g2460 Clacu-Chr2:37542285 5.60E-73 transposed
Clacu06g0230 Clacu-Chr6:2663722 Clacu02g2460 Clacu-Chr2:37542285 3.20E-44 transposed
Clacu10g1790 Clacu-Chr10:31506654 Clacu02g2460 Clacu-Chr2:37542285 9.90E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73391 PF00069 Pkinase 8.50E-73 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2460 - - - 0.0