Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2462 ATGTTTGCTGCCATAGGGCTCGACTCTCCTCTTTCATCTCTATTCTTCGACCTCTTCTGCGTACGGAGGTGCTCAATTCCGTCTCTGGTCTCCAGCTCTTTGGCTACTCCCTTCAATTCCCAATTCAGGGTCTTCAGGGAAGGGAGATTACGCGTCCAAGGGAAGACTATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGTCTCCTTCGTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGGTCTGCTATTTGTGCCTATACCCTTCTCCGCCTTATTTTATTTATCCGCTGCGACATAGCTCATGTTCTAGCCCTAGGCGTGCAACAATTCCCTCTAAGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGACAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAATAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATTTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTGGATATGTGGTCTGTTGGTTGTATCTTTGCAGAACTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAACTAAATAAGATCTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGAGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTCTAGAACTGTTGGAGAAGATGCTTACGCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACGGATCCATTACCATGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACATCCACAGCATGCACGCCTTCCACCTATTCAGCAATCGGGGCAATCACATGCACAGATGCGACCAGTGCCTAACCAACCAATTCATGGGTCTCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCGGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGCGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGCTGCACCTTATGGGTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCTGGAGGCAGCGGTGGTTATGGCGTGGGAGCTCCAAATTATCCACAGAATGGTCCATATCCTGGTAGTTCCGGTACTGGCCGTGGCTCCAATGTGATGGGTGGAAATCGCAACCAACAATATGGGTGGCAACAACAATGA 1818 46.59 MFAAIGLDSPLSSLFFDLFCVRRCSIPSLVSSSLATPFNSQFRVFREGRLRVQGKTMAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGSAICAYTLLRLILFIRCDIAHVLALGVQQFPLSQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQSHAQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGGQGGYGNTQYAQGRGAAPYGSGNMSGAGPRGGAGGSGGYGVGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQQ 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37553016 37559818 - ClG42_02g0246200.10 Clacu02g2462 244530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2462 605 MobiDBLite consensus disorder prediction 426 455 - -
Clacu02g2462 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g2462 605 MobiDBLite consensus disorder prediction 424 605 - -
Clacu02g2462 605 Gene3D Transferase(Phosphotransferase) domain 1 211 453 - -
Clacu02g2462 605 MobiDBLite consensus disorder prediction 462 489 - -
Clacu02g2462 605 PANTHER CELL DIVISION PROTEIN KINASE 81 413 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Clacu02g2462 605 Pfam Protein kinase domain 126 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2462 605 MobiDBLite consensus disorder prediction 517 536 - -
Clacu02g2462 605 SUPERFAMILY Protein kinase-like (PK-like) 126 421 IPR011009 -
Clacu02g2462 605 SMART serkin_6 81 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2462 605 CDD STKc_CDK9_like 81 413 - -
Clacu02g2462 605 ProSiteProfiles Protein kinase domain profile. 81 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g2462 605 MobiDBLite consensus disorder prediction 576 605 - -
Clacu02g2462 605 Gene3D Phosphorylase Kinase; domain 1 124 210 - -
Clacu02g2462 605 FunFam Cyclin-dependent kinase C-2 211 453 - -
Clacu02g2462 605 FunFam Cyclin-dependent kinase C-2 117 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2462 Clacu-Chr2:37553016 Clacu10g1399 Clacu-Chr10:27117387 4.70E-267 dispersed
Clacu11g2083 Clacu-Chr11:31652544 Clacu02g2462 Clacu-Chr2:37553016 1.20E-59 dispersed
Clacu02g2462 Clacu-Chr2:37553016 Clacu05g0668 Clacu-Chr5:5621629 2.00E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73393 PF00069 Pkinase 7.20E-69 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2462 K08819 - csv:101220936 965.296