Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2473 ATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTATATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTGCTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGCACCTAACGAAGTTGAGGCCTATGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAACCCAGTGGATCACACCAATGTGCATCTTATATATGCTAATGTAACTTATGAAGACATTCTGCTAAAGGAAGAATTGGATAGTCTTGCGGCTAGGTTTCCCACCCGCTTTACTATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGTGTTGGCTTCATAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGGCCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAACACTATTGGCCATCCTCCCCAAATGCAGTTCCTGTTCTAA 849 47.0 MPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDCLAVKGPKGRFKYAPNEVEAYGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANVTYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGVGFITEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGHPPQMQFLF 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37616167 37619027 - ClG42_02g0247300.10 Clacu02g2473 244541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2473 282 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 277 IPR039261 -
Clacu02g2473 282 CDD cyt_b5_reduct_like 51 282 - -
Clacu02g2473 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 17 282 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Clacu02g2473 282 FunFam NADH-cytochrome b5 reductase 41 140 - -
Clacu02g2473 282 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Clacu02g2473 282 FunFam NADH-cytochrome b5 reductase 140 282 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 196 207 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 77 88 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 99 106 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 158 177 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 252 260 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 135 149 - -
Clacu02g2473 282 Pfam Oxidoreductase NAD-binding domain 159 265 IPR001433 GO:0016491(InterPro)
Clacu02g2473 282 Gene3D Translation factors 38 138 - -
Clacu02g2473 282 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491(InterPro)
Clacu02g2473 282 SUPERFAMILY Riboflavin synthase domain-like 42 152 IPR017938 -
Clacu02g2473 282 Gene3D - 139 282 IPR039261 -
Clacu02g2473 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 207 IPR001709 GO:0016491(InterPro)
Clacu02g2473 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 252 260 IPR001709 GO:0016491(InterPro)
Clacu02g2473 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 158 177 IPR001709 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2473 K00326 - - csv:101219272 503.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2473 Clacu-Chr2:37616167 Clacu04g0547 Clacu-Chr4:18724820 1.30E-118 dispersed
Clacu02g2473 Clacu-Chr2:37616167 Clacu11g1730 Clacu-Chr11:28524267 3.60E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0379 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.5e-51 197.2
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G53560 64.7 9.7e-48 186.4
Clacu07g0185 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Clacu05g0379 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G48810 60.7 3.3e-46 181.4
Clacu07g0185 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.1e-40 162.2
Clacu05g0379 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Clacu06g0801 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.4e-46 182.6
Clacu07g0185 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Clacu01g0023 . 18 137 NADPH P450 reductases AT2G32720 65.0 8.8e-41 163.3
Clacu08g1204 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Clacu04g0547 . 2 281 NADPH P450 reductases AT5G17770 81.4 1.5e-130 462.6
Clacu10g1653 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.6e-127 450.3
Clacu02g2473 . 10 282 NADPH P450 reductases AT5G17770 73.3 3.5e-116 414.8
Clacu05g0379 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.5e-51 199.1
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.5e-51 197.2
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G53560 64.7 9.7e-48 186.4
Clacu07g0185 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Clacu05g0379 . 1 132 NADPH P450 reductases AT5G48810 64.9 7.8e-48 186.8
Clacu06g0801 . 1 133 NADPH P450 reductases AT5G48810 60.7 3.3e-46 181.4
Clacu07g0185 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Clacu01g0023 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.1e-40 162.2
Clacu05g0379 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.2e-51 196.8
Clacu06g0801 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.4e-46 182.6
Clacu07g0185 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.0e-42 166.8
Clacu01g0023 . 18 137 NADPH P450 reductases AT2G32720 65.0 8.8e-41 163.3
Clacu08g1204 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Clacu04g0547 . 2 281 NADPH P450 reductases AT5G17770 81.4 1.5e-130 462.6
Clacu10g1653 . 2 280 NADPH P450 reductases AT5G17770 78.1 7.6e-127 450.3
Clacu02g2473 . 10 282 NADPH P450 reductases AT5G17770 73.3 3.5e-116 414.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86