Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g2473 ATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTATATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTGCTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGCACCTAACGAAGTTGAGGCCTATGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAACCCAGTGGATCACACCAATGTGCATCTTATATATGCTAATGTAACTTATGAAGACATTCTGCTAAAGGAAGAATTGGATAGTCTTGCGGCTAGGTTTCCCACCCGCTTTACTATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGTGTTGGCTTCATAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGGCCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAACACTATTGGCCATCCTCCCCAAATGCAGTTCCTGTTCTAA 849 47.0 MPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDCLAVKGPKGRFKYAPNEVEAYGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANVTYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGVGFITEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGHPPQMQFLF 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37616167 37619027 - ClG42_02g0247300.10 Clacu02g2473 244541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g2473 282 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 277 IPR039261 -
Clacu02g2473 282 CDD cyt_b5_reduct_like 51 282 - -
Clacu02g2473 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 17 282 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Clacu02g2473 282 FunFam NADH-cytochrome b5 reductase 41 140 - -
Clacu02g2473 282 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Clacu02g2473 282 FunFam NADH-cytochrome b5 reductase 140 282 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 196 207 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 77 88 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 99 106 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 158 177 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 252 260 - -
Clacu02g2473 282 PRINTS Cytochrome B5 reductase signature 135 149 - -
Clacu02g2473 282 Pfam Oxidoreductase NAD-binding domain 159 265 IPR001433 GO:0016491(InterPro)
Clacu02g2473 282 Gene3D Translation factors 38 138 - -
Clacu02g2473 282 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491(InterPro)
Clacu02g2473 282 SUPERFAMILY Riboflavin synthase domain-like 42 152 IPR017938 -
Clacu02g2473 282 Gene3D - 139 282 IPR039261 -
Clacu02g2473 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 207 IPR001709 GO:0016491(InterPro)
Clacu02g2473 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 252 260 IPR001709 GO:0016491(InterPro)
Clacu02g2473 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 158 177 IPR001709 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2473 Clacu-Chr2:37616167 Clacu04g0547 Clacu-Chr4:18724820 1.30E-118 dispersed
Clacu02g2473 Clacu-Chr2:37616167 Clacu11g1730 Clacu-Chr11:28524267 3.60E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g2473 K00326 - csv:101219272 503.827