Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0005 ATGAGTGGTGGAAGAAGTATAAAGGCAAAGTGCAAATATGGTTGCATTCATCGATTAATCCTCCTATACATTTTTGCAGGAACCATGGCAGATGAAGTTCAGAATGATGTGAATGATCAGGTGGCAGATATTGCCCCCTTTGATCCCACTAAGAAGAAGAAGAAGAAGAAGGTTGTGCTTCAGGATCCGACTGATGAGGTTGTTGATAAGTTAGCGGAGAAAACTGAAAGTTTGTCTGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTAGAGGCTAGCTCCTTGAATGATGATGGTGCAGATGCTACGGAGGATTTGGAAGATCAAGCGGGGGAAAATGAAGAGCGTGAGGGAATTGTTCTACAATATCGTTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGCTTCTTGGACGGGTATTCAATATTCTTAGAGAGAATAATCCAGAACTTGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCACCGGCAGCCAGATCATGTTATGGCTTTCTTACTAGCCGAACTGGGAACCAGTGGCTCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTCGAAGGAATTCTGCGTCGATACGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCGGACACTATCCTTTCAAAGGAGAACCGACTTTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCAATTAAAGCTGGATTTGTGGCTCGTGTTGGCCGGAGGAACACTGGGACATGA 897 43.37 MSGGRSIKAKCKYGCIHRLILLYIFAGTMADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDEVVDKLAEKTESLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADATEDLEDQAGENEEREGIVLQYRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 299599 306085 + ClG42_03g0000500.10 Clacu03g0005 244570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0005 298 MobiDBLite consensus disorder prediction 108 122 - -
Clacu03g0005 298 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 143 250 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu03g0005 298 MobiDBLite consensus disorder prediction 91 127 - -
Clacu03g0005 298 Pfam Domain found in IF2B/IF5 167 276 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu03g0005 298 SMART eIF2Bneu4 168 277 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu03g0005 298 Gene3D - 141 283 - -
Clacu03g0005 298 FunFam Eukaryotic translation initiation factor 2 subunit 141 283 - -
Clacu03g0005 298 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 247 282 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu03g0005 298 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 53 284 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0005 K03238 - csv:101220978 519.62