Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0009 ATGGCGGCTTCCAACCGCTGCATGAACACTTCTTGCAGAGCCGCCATCCCCCACGATTGGACCAAAGGATGGCCTCTGGGATCCGCCGGATACGCACATCTCTGCCTCAACTGCGGATCCGCTTATGAAAATTTAGTCTTCTGTGATACATATCACTTAGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATGTCTGGATTATGGAGGTATTGGGTGCACTAGCTGTGTGAAAAGATCTCGACTTGGAGTGATCCGGAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTAATGTTGGCTTTCTGCCACCTACTTCTGTCGAGGATCAAGTGGTTCGAAATGGCATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAACCCAACCACTTTCAGCAATCTCAAAGAGTTGACAGAAGTGCATCTCCTGCACAAAACAGAGGAGAAAATCTCAGGAGCCCATTTGGAGAAGTTAGATCAAGCTTTTTTAATATGAATAAGCTACCTGTTAAATGCCAACCATCTGTTGGTTCATTAACGTACTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGATATGAAAGAATCCCTAAGTCAGCCATCGTTAAATATAACTTTGGGAGTTCCATTAGGTACTCCAAACTTTGTGGTACCCTTTTCAGGAAGTGCTGCTGAAGAGGATGAAAAGAGCATTCTGCCATTTCAACAGGGTCAAAGATCTCGTCCAATTTTTCCCAAGCTCATAAAAACTGGGACCGCAGTTAATTCCGAAGCAAGAAAGGGAATGGCACCTCTGGTACGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAAAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACCGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCTATCTCCCAATCAGAAGGTCTTCCTGTTAGGATTCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTCTGGAGGGCGTTACTCCTTGCATACAATCCATGCAATTAAGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCTACTGATATACAGGATGCAAAGATCCCTACACTTTCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGAAGGAGAAACTAGTTTGCGTAAAAGTGAAAATTCTGGGGGAAGGACAAATGATGCTTCAGGACAACAACCAGTGTTAACCATAGAGAAGAAAGGGGCTCGAAACATTGGGTCTAAAAACAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACTTGGGAAGAAGCTCAAGATCTACTCCGTCCACCACCAAGTGCAAATCCCACCATTGTCACTATTGATGACCATGAATTCGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGAGTTGTCCAGATAATGTTTGGGATTTGAGCAGATGTACATGTTCTGCACCAGAAGAGATCAGCACAAAGGAACAAGACAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTATTCAGGAACTTGAGCCTTCTGGTTTGGATGCGCTAGCCAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACTTGCAGGAATCAGGTACGACGACCAGGCATCCTCGGCACCGACCAGGATGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAGGGGAAGCATAAATCTACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACACTTATGCTGCGCAAGAAGAAACGCCAATCAGAACGTGAAGTGGAAACTCTGCTCAAGGATAGGAATCCACAGTTCGATGAAACAGGAACGGGTGGGACACTGAGGGGTACGTCTCTGCAAACAAACTATTTAGAGAATGAAGGAAGCCAGAGCAGGATAAAAGATGAGGAGGCTGCAAATAGCAGTGGGCAAATTGACTTGAACTGCCACCCCGACCGTGAGGACATGGAACTGGAGGGAGCAGGATTAAGCATGATGAGTCTTGTGGAGGCTGCCAGCCAACCTTTAGATAGCTATTCAAAGCAAATTGGCATCTCCAGTGTCACGAGTGAGCAGCAGTCCAGTCAACCAAGTAGCGTGGAGAGTGAGAGACGCCTGTCTGAGGAATTGTGTCATGGATCAGGACACGAGAGCACAAGATCTCTTTCTATCTTGTCCGAGTGTTCTGAGAAGATTCCTAAGCTCAGGAAGGCAAGACTGGAGCTTGAAGCACTGTACGAGGGGGTGCCAGACGATTCGGTTAATCTCACTTTTCGACATCTCACGGATGTCAATCTTCAACCCAACTCTTTTGAAAAGAGAAGAGGCACCCCATCAATTCCAATTCCAATCCCAAGAGATAATGAGACTACCCCATTAAACAAACTCCCCAGCCTAGACTTCAACAGAGCTCTGCAAGCAGCCAACCAACAGTCCCGCCCCGATACCAAAATCAGCCTTCACCCGAGTGCGCAGGTAGGTGGAAATGGAAGTGCCGGCGACATTCAAAGCCGTGCGAAGTCGGAGCATGTGGGTGGGTTAAGGCCGGCTTTGGAGTACACTGCGGCCTACGAGGAGGCAAGCCGCATCAGCGGTATGAGTTCCATGTATCAGCATCACAGGGCCACGGTCGGGACCGGGAGACGCCGCCCTGGGATTCCTCACTCCAATATATGCGCCAACTGCACCACCTACATCTATATCTTCCGACATCGTTGCCTGGTCTGTGGAAGAGTTTACTGCCGGCAATGCGTAAGAATAGGGATGGGGGAGATGACGGAGGGAAGGAAGTGTATGGAGTGTTTGGGAAGAAAATTCAGCCACAGATACATAGGGAAGGCAGGAGATGTGGGTTGCTTTGGCTGGAGGTACTCAACTGCGGTGAAGCAGGCGGAGCTCAAGTGGGCGGAGAAAGGGCCTCGCCGAAAAGGAGAGAGAAGGTACGGCGGTGGCGTAACCAACTCCATAAGCATGATGTCGGCAAGTCAGAGCCCATGGGCACCCACCACCACCAGCGTGGATGTTTCCACCATTTACAGCTCTCGTTTCGCCGTCATGTCGTCCCCGGCCCTGTCCCCTCATTCTCCGGCTCACCGCCACCATTTACCCTTTTAG 3540 47.43 MAASNRCMNTSCRAAIPHDWTKGWPLGSAGYAHLCLNCGSAYENLVFCDTYHLEETGWRDCSFCGKRIHCGCIASKSMFECLDYGGIGCTSCVKRSRLGVIRRDEISNGFDAVTVGNVGFLPPTSVEDQVVRNGINEEKLLQLCNIMEANEPNHFQQSQRVDRSASPAQNRGENLRSPFGEVRSSFFNMNKLPVKCQPSVGSLTYSKLDTSRPHLELKDMKESLSQPSLNITLGVPLGTPNFVVPFSGSAAEEDEKSILPFQQGQRSRPIFPKLIKTGTAVNSEARKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDIQDAKIPTLSNGSHSGDASFSGVFQNLPLRAEGETSLRKSENSGGRTNDASGQQPVLTIEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRRLPVDVLLPPKWSCPDNVWDLSRCTCSAPEEISTKEQDNLLRASKDFKKRKIMKSQKSIQELEPSGLDALASAAVLGDSMADLQESGTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVETLLKDRNPQFDETGTGGTLRGTSLQTNYLENEGSQSRIKDEEAANSSGQIDLNCHPDREDMELEGAGLSMMSLVEAASQPLDSYSKQIGISSVTSEQQSSQPSSVESERRLSEELCHGSGHESTRSLSILSECSEKIPKLRKARLELEALYEGVPDDSVNLTFRHLTDVNLQPNSFEKRRGTPSIPIPIPRDNETTPLNKLPSLDFNRALQAANQQSRPDTKISLHPSAQVGGNGSAGDIQSRAKSEHVGGLRPALEYTAAYEEASRISGMSSMYQHHRATVGTGRRRPGIPHSNICANCTTYIYIFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCMECLGRKFSHRYIGKAGDVGCFGWRYSTAVKQAELKWAEKGPRRKGERRYGGGVTNSISMMSASQSPWAPTTTSVDVSTIYSSRFAVMSSPALSPHSPAHRHHLPF 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 318694 329590 + ClG42_03g0000900.10 Clacu03g0009 244574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0009 1179 MobiDBLite consensus disorder prediction 829 861 - -
Clacu03g0009 1179 ProSiteProfiles Zinc finger CW-type profile. 574 624 IPR011124 GO:0008270(InterPro)
Clacu03g0009 1179 CDD B3_DNA 334 435 IPR003340 GO:0003677(InterPro)
Clacu03g0009 1179 SMART B3_2 336 436 IPR003340 GO:0003677(InterPro)
Clacu03g0009 1179 MobiDBLite consensus disorder prediction 155 173 - -
Clacu03g0009 1179 Pfam CW-type Zinc Finger 579 622 IPR011124 GO:0008270(InterPro)
Clacu03g0009 1179 MobiDBLite consensus disorder prediction 474 497 - -
Clacu03g0009 1179 MobiDBLite consensus disorder prediction 481 496 - -
Clacu03g0009 1179 Gene3D - 571 623 - -
Clacu03g0009 1179 MobiDBLite consensus disorder prediction 951 985 - -
Clacu03g0009 1179 SUPERFAMILY DNA-binding pseudobarrel domain 333 437 IPR015300 -
Clacu03g0009 1179 Gene3D - 314 441 IPR015300 -
Clacu03g0009 1179 MobiDBLite consensus disorder prediction 911 935 - -
Clacu03g0009 1179 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 845 - -
Clacu03g0009 1179 MobiDBLite consensus disorder prediction 951 978 - -
Clacu03g0009 1179 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Clacu03g0009 1179 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677(InterPro)
Clacu03g0009 1179 MobiDBLite consensus disorder prediction 829 843 - -
Clacu03g0009 1179 MobiDBLite consensus disorder prediction 767 792 - -
Clacu03g0009 1179 MobiDBLite consensus disorder prediction 155 176 - -
Clacu03g0009 1179 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2352 Clacu-Chr1:34263983 Clacu03g0009 Clacu-Chr3:318694 5.70E-163 dispersed
Clacu03g0009 Clacu-Chr3:318694 Clacu10g2238 Clacu-Chr10:35320971 1.70E-217 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47360 PF02362 B3 5.30E-16 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0009 K09287 - csv:101214226 1458.74