Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0017 ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCTAATTCTCATCCCTCTTTCACTTTCTCTACTCATCCTTTTATGACTTCTTCTTACTCTGACCTTCTAGCCTCCGGCAACAACCATCCTCCTTCCTCCGCCGCACCCCACGCCGATCTCCGGGGTTCCGGCACCGGAGTTCCTAAATTCAAATCCCTCCCTCCTCCTTCTCTCCCTCTCTCTCCTCCTCCCCTCTCTCCTTCTTCCTTTTTCGCTATTCCTCCTGGCTTGAGTCCCGCCGAGCTTCTTGATTCCCCTGTTCTTCTCAGTGCTTCTCATGTTTTGCCGTCGCCGACCACTGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCTGGGTATAATCAGCAGAGCATTAAGGAAGAAAACAAATATCTGTCTAATTTCTCATTTCAAACTCAATCGTCAAAGCTGCCGCCGACGTCTTTTCAGCCTTCATCCACCACAGCTCCCACGACTCAGGGATGGACTTTTCAAGAGCAGCGCAAGAAAGAGGATGGTTTTTCGTCGGAGAAGAATATGGTGAAGCCGGAGTTCGGATCGATGCGGAGCTTCTCACCGGAATATGGGGTTGTTCAAAACCAAAACCAAACCAATGGCAGCGGGGAGTTGCAGTCTGATTACGGCAACAATTACCCTCAACAATCTCAGACGGTGAATCGAAGATCGGACGACGGCTACAACTGGAGAAAATACGGCCAAAAACAGGTTAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACTTTCCCCAATTGCCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCATCCAAAGCCCCAATCCACAAGGAGGTCGTCGCTGTCGTCCGCCGGTTCTTCCCACACCATGGTGGCTTCGAATCAGGCCACCAGCGAGATGGCGGACCAGTCATTTACAACCCAAGGCAGCGGCCAATTTGATGGCGTTGCCACGCCGGAGAATTCCTCGATTTCAATTGGCGACGACGACTTCGATCGGAGCTCTCAAAAGAGCAAATCCGGAGGGGACGATTTTGATGAGGACGAACCAGAGGCTAAGAGATGGCGAAGAGAAGGTGACAACAATGAAGGTATTTCGGCGGTCGGTAGCCGGACGGTGAGAGAGCCGAGAGTCGTCGTCCAAACCACCAGCGACATCGACATTCTCGACGATGGTTACCGGTGGAGGAAGTATGGTCAGAAAGTTGTAAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGTACAAATCCAGGATGTCCAGTAAGAAAGCATGTGGAGAGAGCTTCACATGATCTAAGAGCAGTGATCACAACTTATGAAGGGAAGCACAACCACGATGTTCCACCGGCACGTGGGAGTGGAAGCCATTCCCTCAGCCGTCCATTCCCCAACAACGAAGCTCCGGCAACTGCGATCCGGCCATCGGCGTTGACCCATCAGTCAAACAACGGGGGGCATCTGCAGGGTCTGAGGCTGCAGCAATCTTCAGATTCCCAAGCAGCATTCACAGTGGAAATGGTGCAAAATGGGAATGGATTTTCATTCCCAGAATTTGGAAACTCAATGGGAATGGGAATGGGAATGGGTTCCTACATCAACCAAACACAGCCCAGTGATAATTTGTTCACCAGAGCCAAAGAAGAGCCAAGAGATCATGACATGTTCATCCAGTCTCTCCTATGTTAG 1755 50.31 MASSSGSLDTSANSHPSFTFSTHPFMTSSYSDLLASGNNHPPSSAAPHADLRGSGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYNQQSIKEENKYLSNFSFQTQSSKLPPTSFQPSSTTAPTTQGWTFQEQRKKEDGFSSEKNMVKPEFGSMRSFSPEYGVVQNQNQTNGSGELQSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHTMVASNQATSEMADQSFTTQGSGQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDFDEDEPEAKRWRREGDNNEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGSHSLSRPFPNNEAPATAIRPSALTHQSNNGGHLQGLRLQQSSDSQAAFTVEMVQNGNGFSFPEFGNSMGMGMGMGSYINQTQPSDNLFTRAKEEPRDHDMFIQSLLC 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 374997 377296 - ClG42_03g0001700.10 Clacu03g0017 244582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0017 584 FunFam WRKY transcription factor 227 296 - -
Clacu03g0017 584 MobiDBLite consensus disorder prediction 105 127 - -
Clacu03g0017 584 MobiDBLite consensus disorder prediction 143 171 - -
Clacu03g0017 584 SUPERFAMILY WRKY DNA-binding domain 235 295 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0017 584 MobiDBLite consensus disorder prediction 200 236 - -
Clacu03g0017 584 ProSiteProfiles WRKY domain profile. 237 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0017 584 MobiDBLite consensus disorder prediction 286 392 - -
Clacu03g0017 584 MobiDBLite consensus disorder prediction 462 492 - -
Clacu03g0017 584 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 161 491 IPR044810 GO:0003700(InterPro)
Clacu03g0017 584 FunFam WRKY transcription factor 33 398 464 - -
Clacu03g0017 584 Pfam WRKY DNA -binding domain 237 293 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0017 584 Pfam WRKY DNA -binding domain 412 469 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0017 584 MobiDBLite consensus disorder prediction 143 241 - -
Clacu03g0017 584 SMART WRKY_cls 236 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0017 584 SMART WRKY_cls 411 470 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0017 584 SUPERFAMILY WRKY DNA-binding domain 403 471 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0017 584 MobiDBLite consensus disorder prediction 31 81 - -
Clacu03g0017 584 ProSiteProfiles WRKY domain profile. 406 471 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0017 584 MobiDBLite consensus disorder prediction 348 383 - -
Clacu03g0017 584 MobiDBLite consensus disorder prediction 63 81 - -
Clacu03g0017 584 Gene3D WRKY domain 223 296 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0017 584 Gene3D WRKY domain 398 464 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu03g0017 584 MobiDBLite consensus disorder prediction 291 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g1968 Clacu-Chr2:33198552 Clacu03g0017 Clacu-Chr3:374997 1.80E-77 dispersed
Clacu03g0017 Clacu-Chr3:374997 Clacu10g0378 Clacu-Chr10:4791815 2.70E-70 dispersed
Clacu03g0017 Clacu-Chr3:374997 Clacu10g2214 Clacu-Chr10:35149086 9.90E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47361 PF03106 WRKY 3.60E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0017 K13424 - csv:101207158 1038.48