Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0048 ATGGTTGACAACGGCGAGGAGAAGTTGCTGGCTATGGCTCGCCACATAGCCAAGACCATGGGTCGCAACGAGTCCATGGCTGATGATATTCTTCAGATTTTTTCCAATTTTGATGCTAGGTTTTCCCTTGATAAGTTGTCTGATAAACCCGATGAGCTTGACCCCAGAGCCCCCCCCGCTTTGCAACGCTCTCTCAAGTCTTTGGACCGCCGGATCTCCCAATACTTGGCTGCCGACCACCCCATTTGGGCTGACTCCGCCGATTCCTCTGCTTTTCTTGACGCTATCGATGAGTTGATGGTTATCATTAGGGACTGGGCTCCTATGGCTAGGGATAAGTCTGTTACCGCCTACCTTGCTCGCGCCGACGATCTTATGCAGCAGGCCATGTTCCGTGTCGACCAAGAGTTCCGGTCGTTGATGGACCGTGGAGGTGAGTCTTTTGAATTGACTCGCCATTTCAGGAACGGCGAGTCAACGGGGGATTTCTGCTTCGATTCTGAGGAAGATGAGGAAGGAATTCTTGGCGATGGCGATGCTCTCCAGATCCCTGTGGCGCAGCCGGTGACGGACTACAACATCGTTATCGATGCACTTCCGTCGGGGACTATCAGCGATCTTCATGAAATAGCGAAGCGTATGGTAGCGGCTGGGTTCGAGAAAGAGTGTTCACACGCTTACAGTAGCTGCAGGAGGGAGTTTTTGGAGGAGAGTCTTTCTAGGTTGGGGTTACAGAAGCTGAGCATCGATGAAGTTCAAAAGATGCAATGGCATGACCTTGAAGAGGAGATTGAACGCTGGATGAAAGCGATTACTGTCTCCCTTCGAATTCTCTTCCCAAGTGAACGACGCCTCTGCGAACGCGTCTTCGTCGGCCTCTCCTCCACCGCCGATCTTTCTTTCATGGAGGTCTGCCGTGGATCGACTATCCAGCTATTGAATTTTGCAGATGCGGTAGCAATTGGCTCCCGCGCGCCGGAACGACTTTTCAAAATCCTCGATATGTTCGAGACCTTGAGAGACTTGATGCCAGAATTCGATTCAGTATTTTCAGATCAGTACTGCTTATTGCTTAGAAATGAAGCAATTACAATCTGGAAAAGGTTAGGCGGAACAATCAAAGGGATCTTCATGGAGCTTGAGAATTTGATCCGCCGTGATCCGGCTAAAACTCCGGTCCCGGGGGGCGGCCTTCATCCAATCACTCGATATGTGATGAATTACCTTAGAGCAGCCTGTAAATCTCGGCAGACTTTAGAGCAAGTTTTCGAAGAAGCTGCTCTTCCCTCTAAGGATTACACTAAGCTCGAGGACAGAGCAGCAGCATCGTCTTCCTTATCAGTTCAAATGGACTGGATAATGGAGCTTTTAGAGAGCAATTTAGAGGCGAAATCGAAGATATACAAGGATCTTTCCTTAAGCTCTGTGTTTCTGATGAACAATGGGCGATACATTGTTCAGAAAGTGAAAGACAGTGAATTAGGGTCAGTTTTAGGCGAGGATTGGATTCGAAAACACTCGGTTAAAAACCGGCAATACCTTGGAAACTACCTGAAAAGCTCATGGAGCAAGGTGGTCGGAGCATTGAAAATGGACAGTGGCACTATAGCTCCGGCTGTGATGAAGGAGAAGCTCCAATCATTCAATATGCAATTTGAAGAAATCTGCCAAACCCAATCCACATGGGTGATATTTGAGCATCAGCTTAGAGAAGAAGCAAGAATCTCAGTTGCCAAAATTCTGTTGCCAGCATATCAAAAGTTCATCGGCAGATACCAGAGTTTGCCGGAGTTGGCAAAGCGCACAGACCGGTATTTGAAGTACACGGCGGAGGATATGGAGGCTCGAATCACCGAGCTGTTTGAAGGCGGCGGCGGCGGCGGCGGCGGCTCAGGCAGTGGAAGGAGGTAA 1911 49.19 MVDNGEEKLLAMARHIAKTMGRNESMADDILQIFSNFDARFSLDKLSDKPDELDPRAPPALQRSLKSLDRRISQYLAADHPIWADSADSSAFLDAIDELMVIIRDWAPMARDKSVTAYLARADDLMQQAMFRVDQEFRSLMDRGGESFELTRHFRNGESTGDFCFDSEEDEEGILGDGDALQIPVAQPVTDYNIVIDALPSGTISDLHEIAKRMVAAGFEKECSHAYSSCRREFLEESLSRLGLQKLSIDEVQKMQWHDLEEEIERWMKAITVSLRILFPSERRLCERVFVGLSSTADLSFMEVCRGSTIQLLNFADAVAIGSRAPERLFKILDMFETLRDLMPEFDSVFSDQYCLLLRNEAITIWKRLGGTIKGIFMELENLIRRDPAKTPVPGGGLHPITRYVMNYLRAACKSRQTLEQVFEEAALPSKDYTKLEDRAAASSSLSVQMDWIMELLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKDSELGSVLGEDWIRKHSVKNRQYLGNYLKSSWSKVVGALKMDSGTIAPAVMKEKLQSFNMQFEEICQTQSTWVIFEHQLREEARISVAKILLPAYQKFIGRYQSLPELAKRTDRYLKYTAEDMEARITELFEGGGGGGGGSGSGRR 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 611067 612977 + ClG42_03g0004800.10 Clacu03g0048 244613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0048 636 Gene3D Exocyst complex component Exo70 82 626 - -
Clacu03g0048 636 Pfam Exo70 exocyst complex subunit C-terminal 266 618 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Clacu03g0048 636 PANTHER EXOCYST COMPLEX PROTEIN EXO70 63 623 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Clacu03g0048 636 FunFam Exocyst subunit Exo70 family protein 76 627 - -
Clacu03g0048 636 SUPERFAMILY Cullin repeat-like 83 622 IPR016159 -
Clacu03g0048 636 Pfam Exocyst complex component Exo70 N-terminal 86 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0048 K07195 - - csv:101204511 1158.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0048 Clacu-Chr3:611067 Clacu03g1393 Clacu-Chr3:26909507 3.00E-107 dispersed
Clacu03g0048 Clacu-Chr3:611067 Clacu03g0202 Clacu-Chr3:2230838 8.90E-75 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g2379 . 12 653 EXO70 exocyst subunit family AT5G03540 76.3 1.3e-286 982.2
Clacu01g1567 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 5.7e-266 913.7
Clacu01g1567 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 1.7e-299 1025.0
Clacu05g2379 . 14 653 EXO70 exocyst subunit family AT5G52340 74.7 6.0e-273 936.8
Clacu01g1567 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 1.3e-176 616.7
Clacu05g2379 . 149 653 EXO70 exocyst subunit family AT5G52350 59.5 7.7e-166 580.9
Clacu03g0048 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.6e-246 847.8
Clacu03g0048 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Clacu07g1547 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.6e-175 611.7
Clacu01g0869 . 113 724 EXO70 exocyst subunit family AT5G13990 54.5 5.9e-189 657.9
Clacu07g1457 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Clacu07g1457 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.3e-208 723.0
Clacu07g1457 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.4e-219 756.9
Clacu03g1393 . 27 664 EXO70 exocyst subunit family AT5G50380 61.5 3.8e-225 778.1
Clacu03g0370 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.8e-211 732.6
Clacu08g1414 . 47 718 EXO70 exocyst subunit family AT4G31540 73.6 1.3e-294 1008.8
Clacu10g2053 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 1.9e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009102 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 0 1 33