Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu03g0063 | ATGGCGAAAACGGCGGCGCTTTCGTGGACGCGAAGTAAGTGTCTCATCGGAAAGGGCTCCTTTGGAACAGTGAGTGTCGGAATCGGGAAATCGGACGGTCGGATTTTCGCGGTGAAATCTGTGGAGCAGAGTGATGGATTTCGGCGACAAATTGAGTGTTTAGAGAACGAAATTCGGATTCTCCGATCCTTGAATTCGCCTTACGTTGTGGGGTTTCTTGGCGATGATGTTTCTGTTGAGTCTCCCACGACGTCGTTTCGAAATCTGCACATGGAGTATTTGCCAGGTGGCACCGTTGCCGACGATCCCACCGGGGCCGGCGGTGAGAAGCTTTTACGGGAGAGAACATGGTGCCTCGTTTCGGCTCTGAGTTACATTCACTCGAAAGGAATTGTCCATTGTGATGTTAAAGGGAGGAACATTTTGATCGGATTGAATCCCGGGGTCGTGAAATTGGCTGATTTCGGCTCTGCAATTGAGCTTTCAGGCGCCGACGACAGGTGTCGGGGTTCGGTTGCGCCACGTGGGAGTCCATTGTGGATGGCGCCGGAGGTGGTCCGGGGAGAATTTCAGGGGCCGGAATCGGATGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGAAAACCGGTGTGGGAAGATTTCGGAGCCGATACGCTGAGTCGAATCGGATTTTCGGATGATTTGCCGGAGTTTCCAACACGGTTGTCAGAAGTCGGCCGGGATTTTCTCCGGAAGTGTCTCAGAAGGAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCGGCCTCGCCGGAGATTGCTGTAGAGAATTCCCCCAGGTGTGTGCTTGACTGGGTCAACGGCAGTTTCTCCGACGAAGAGGAGGAAGTTCAGATCGCCAACGAAACCTCCGGCTCCGGTGGGCAGGAAAGTGAGATCTCTGCTAAGGAAAGAATTGGGAAATTGAGTACGAGTGAATGGCCGAATTGGGAATCGGACGGTTGGTCGCCGGTGAGAAGATGTTGCAGTGAAGCGGCGGCGGAGACGGAGGCGAGCGGTCGGGAAGAAGAAAAAGAAGAGAGAGGGGCAGAATGGGAATATGTAAATTTGAGAGGGGTAGAAGGGGGAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTAACAGACAATCACGGAAAATTGGGTGCCGAATATTCAAATCCTGGCGGTAAGAAAATTTCGGAGCAGCCACGTAATAATTACGGCGGCGGTGACGGTGACGGTGGCGTTAGCGGTGGATTAATTTTCCTGCGGTGTGGGTTTGAAGGATGTGCAATTACAACAATAACCTCGTGGATATACTCAATTGAATTGATATTATGTTATTATTGGAAAATATTAATGAAGCAATTGGTGTTATTTGGGAATTACACTTTATTACCTTTCTTTTCTGCCTAA | 1455 | 51.13 | MAKTAALSWTRSKCLIGKGSFGTVSVGIGKSDGRIFAVKSVEQSDGFRRQIECLENEIRILRSLNSPYVVGFLGDDVSVESPTTSFRNLHMEYLPGGTVADDPTGAGGEKLLRERTWCLVSALSYIHSKGIVHCDVKGRNILIGLNPGVVKLADFGSAIELSGADDRCRGSVAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPVWEDFGADTLSRIGFSDDLPEFPTRLSEVGRDFLRKCLRRNPSERWSCDRLLQHPFLAAAAASPEIAVENSPRCVLDWVNGSFSDEEEEVQIANETSGSGGQESEISAKERIGKLSTSEWPNWESDGWSPVRRCCSEAAAETEASGREEEKEERGAEWEYVNLRGVEGGMEGTSSEYSEFVTDNHGKLGAEYSNPGGKKISEQPRNNYGGGDGDGGVSGGLIFLRCGFEGCAITTITSWIYSIELILCYYWKILMKQLVLFGNYTLLPFFSA | 484 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 782369 | 783823 | - | ClG42_03g0006300.10 | Clacu03g0063 | 244628 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu03g0063 | 484 | Pfam | Protein kinase domain | 15 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu03g0063 | 484 | Coils | Coil | 44 | 64 | - | - | |
Clacu03g0063 | 484 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 131 | 143 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu03g0063 | 484 | ProSiteProfiles | Protein kinase domain profile. | 10 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu03g0063 | 484 | FunFam | Serine threonine protein kinase putative | 7 | 328 | - | - | |
Clacu03g0063 | 484 | ProSitePatterns | Protein kinases ATP-binding region signature. | 16 | 39 | IPR017441 | GO:0005524(InterPro) | |
Clacu03g0063 | 484 | SUPERFAMILY | Protein kinase-like (PK-like) | 14 | 287 | IPR011009 | - | |
Clacu03g0063 | 484 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 5 | 270 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Clacu03g0063 | 484 | SMART | serkin_6 | 10 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu03g0063 | 484 | Gene3D | Transferase(Phosphotransferase) domain 1 | 5 | 323 | - | - | |
Clacu03g0063 | 484 | CDD | STKc_MAPKKK | 8 | 269 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0208 | Clacu-Chr2:1997652 | Clacu03g0063 | Clacu-Chr3:782369 | 5.70E-56 | dispersed | |
Clacu03g0063 | Clacu-Chr3:782369 | Clacu09g1090 | Clacu-Chr9:10350225 | 2.50E-53 | dispersed | |
Clacu03g0063 | Clacu-Chr3:782369 | Clacu02g0922 | Clacu-Chr2:11740766 | 2.90E-57 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73396 | PF00069 | Pkinase | 8.60E-53 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu03g0063 | - | - | - | 0.0 |