Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu03g0063 ATGGCGAAAACGGCGGCGCTTTCGTGGACGCGAAGTAAGTGTCTCATCGGAAAGGGCTCCTTTGGAACAGTGAGTGTCGGAATCGGGAAATCGGACGGTCGGATTTTCGCGGTGAAATCTGTGGAGCAGAGTGATGGATTTCGGCGACAAATTGAGTGTTTAGAGAACGAAATTCGGATTCTCCGATCCTTGAATTCGCCTTACGTTGTGGGGTTTCTTGGCGATGATGTTTCTGTTGAGTCTCCCACGACGTCGTTTCGAAATCTGCACATGGAGTATTTGCCAGGTGGCACCGTTGCCGACGATCCCACCGGGGCCGGCGGTGAGAAGCTTTTACGGGAGAGAACATGGTGCCTCGTTTCGGCTCTGAGTTACATTCACTCGAAAGGAATTGTCCATTGTGATGTTAAAGGGAGGAACATTTTGATCGGATTGAATCCCGGGGTCGTGAAATTGGCTGATTTCGGCTCTGCAATTGAGCTTTCAGGCGCCGACGACAGGTGTCGGGGTTCGGTTGCGCCACGTGGGAGTCCATTGTGGATGGCGCCGGAGGTGGTCCGGGGAGAATTTCAGGGGCCGGAATCGGATGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGAAAACCGGTGTGGGAAGATTTCGGAGCCGATACGCTGAGTCGAATCGGATTTTCGGATGATTTGCCGGAGTTTCCAACACGGTTGTCAGAAGTCGGCCGGGATTTTCTCCGGAAGTGTCTCAGAAGGAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCGGCCTCGCCGGAGATTGCTGTAGAGAATTCCCCCAGGTGTGTGCTTGACTGGGTCAACGGCAGTTTCTCCGACGAAGAGGAGGAAGTTCAGATCGCCAACGAAACCTCCGGCTCCGGTGGGCAGGAAAGTGAGATCTCTGCTAAGGAAAGAATTGGGAAATTGAGTACGAGTGAATGGCCGAATTGGGAATCGGACGGTTGGTCGCCGGTGAGAAGATGTTGCAGTGAAGCGGCGGCGGAGACGGAGGCGAGCGGTCGGGAAGAAGAAAAAGAAGAGAGAGGGGCAGAATGGGAATATGTAAATTTGAGAGGGGTAGAAGGGGGAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTAACAGACAATCACGGAAAATTGGGTGCCGAATATTCAAATCCTGGCGGTAAGAAAATTTCGGAGCAGCCACGTAATAATTACGGCGGCGGTGACGGTGACGGTGGCGTTAGCGGTGGATTAATTTTCCTGCGGTGTGGGTTTGAAGGATGTGCAATTACAACAATAACCTCGTGGATATACTCAATTGAATTGATATTATGTTATTATTGGAAAATATTAATGAAGCAATTGGTGTTATTTGGGAATTACACTTTATTACCTTTCTTTTCTGCCTAA 1455 51.13 MAKTAALSWTRSKCLIGKGSFGTVSVGIGKSDGRIFAVKSVEQSDGFRRQIECLENEIRILRSLNSPYVVGFLGDDVSVESPTTSFRNLHMEYLPGGTVADDPTGAGGEKLLRERTWCLVSALSYIHSKGIVHCDVKGRNILIGLNPGVVKLADFGSAIELSGADDRCRGSVAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPVWEDFGADTLSRIGFSDDLPEFPTRLSEVGRDFLRKCLRRNPSERWSCDRLLQHPFLAAAAASPEIAVENSPRCVLDWVNGSFSDEEEEVQIANETSGSGGQESEISAKERIGKLSTSEWPNWESDGWSPVRRCCSEAAAETEASGREEEKEERGAEWEYVNLRGVEGGMEGTSSEYSEFVTDNHGKLGAEYSNPGGKKISEQPRNNYGGGDGDGGVSGGLIFLRCGFEGCAITTITSWIYSIELILCYYWKILMKQLVLFGNYTLLPFFSA 484
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 782369 783823 - ClG42_03g0006300.10 Clacu03g0063 244628
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu03g0063 484 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0063 484 Coils Coil 44 64 - -
Clacu03g0063 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu03g0063 484 ProSiteProfiles Protein kinase domain profile. 10 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0063 484 FunFam Serine threonine protein kinase putative 7 328 - -
Clacu03g0063 484 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524(InterPro)
Clacu03g0063 484 SUPERFAMILY Protein kinase-like (PK-like) 14 287 IPR011009 -
Clacu03g0063 484 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 270 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu03g0063 484 SMART serkin_6 10 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu03g0063 484 Gene3D Transferase(Phosphotransferase) domain 1 5 323 - -
Clacu03g0063 484 CDD STKc_MAPKKK 8 269 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0208 Clacu-Chr2:1997652 Clacu03g0063 Clacu-Chr3:782369 5.70E-56 dispersed
Clacu03g0063 Clacu-Chr3:782369 Clacu09g1090 Clacu-Chr9:10350225 2.50E-53 dispersed
Clacu03g0063 Clacu-Chr3:782369 Clacu02g0922 Clacu-Chr2:11740766 2.90E-57 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73396 PF00069 Pkinase 8.60E-53 CL0016 Clacu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu03g0063 - - - 0.0